Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HIF3AQ9Y2N7 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HIF3AQ9Y2N7 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HIF3AQ9Y2N7 TBC1D3P2-202ENST00000577902 1649 ntBASIC16.79■□□□□ 0.28
HIF3AQ9Y2N7 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC16.79■□□□□ 0.28
HIF3AQ9Y2N7 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
HIF3AQ9Y2N7 ABHD17AP1-201ENST00000358206 933 ntBASIC16.79■□□□□ 0.28
HIF3AQ9Y2N7 ENSA-205ENST00000361532 792 ntTSL 2 BASIC16.79■□□□□ 0.28
HIF3AQ9Y2N7 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
HIF3AQ9Y2N7 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HIF3AQ9Y2N7 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
HIF3AQ9Y2N7 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC16.79■□□□□ 0.28
HIF3AQ9Y2N7 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HIF3AQ9Y2N7 KRT18P41-201ENST00000518924 1277 ntBASIC16.79■□□□□ 0.28
HIF3AQ9Y2N7 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC16.79■□□□□ 0.28
HIF3AQ9Y2N7 AC008622.2-201ENST00000617006 1229 ntBASIC16.79■□□□□ 0.28
HIF3AQ9Y2N7 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC16.79■□□□□ 0.28
HIF3AQ9Y2N7 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HIF3AQ9Y2N7 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC16.79■□□□□ 0.28
HIF3AQ9Y2N7 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HIF3AQ9Y2N7 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HIF3AQ9Y2N7 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HIF3AQ9Y2N7 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HIF3AQ9Y2N7 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC16.79■□□□□ 0.28
HIF3AQ9Y2N7 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
HIF3AQ9Y2N7 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HIF3AQ9Y2N7 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HIF3AQ9Y2N7 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HIF3AQ9Y2N7 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HIF3AQ9Y2N7 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
HIF3AQ9Y2N7 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
HIF3AQ9Y2N7 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
HIF3AQ9Y2N7 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HIF3AQ9Y2N7 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
HIF3AQ9Y2N7 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
HIF3AQ9Y2N7 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HIF3AQ9Y2N7 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC16.78■□□□□ 0.28
HIF3AQ9Y2N7 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC16.78■□□□□ 0.28
HIF3AQ9Y2N7 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
HIF3AQ9Y2N7 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC16.78■□□□□ 0.28
HIF3AQ9Y2N7 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
HIF3AQ9Y2N7 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HIF3AQ9Y2N7 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
HIF3AQ9Y2N7 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC16.78■□□□□ 0.28
HIF3AQ9Y2N7 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HIF3AQ9Y2N7 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC16.78■□□□□ 0.28
HIF3AQ9Y2N7 MFAP1P1-201ENST00000442257 1255 ntBASIC16.78■□□□□ 0.28
HIF3AQ9Y2N7 AL158047.1-201ENST00000445918 881 ntBASIC16.78■□□□□ 0.28
HIF3AQ9Y2N7 CA15P1-201ENST00000481698 905 ntBASIC16.78■□□□□ 0.28
HIF3AQ9Y2N7 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC16.78■□□□□ 0.28
HIF3AQ9Y2N7 AC113410.3-201ENST00000623366 203 ntBASIC16.78■□□□□ 0.28
HIF3AQ9Y2N7 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC16.78■□□□□ 0.28
HIF3AQ9Y2N7 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HIF3AQ9Y2N7 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HIF3AQ9Y2N7 AC008556.1-201ENST00000610908 2040 ntBASIC16.78■□□□□ 0.28
HIF3AQ9Y2N7 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HIF3AQ9Y2N7 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HIF3AQ9Y2N7 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC16.78■□□□□ 0.28
HIF3AQ9Y2N7 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
HIF3AQ9Y2N7 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HIF3AQ9Y2N7 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
HIF3AQ9Y2N7 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
HIF3AQ9Y2N7 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
HIF3AQ9Y2N7 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC16.78■□□□□ 0.28
HIF3AQ9Y2N7 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC16.78■□□□□ 0.28
HIF3AQ9Y2N7 ABALON-201ENST00000629058 1903 ntBASIC16.78■□□□□ 0.28
HIF3AQ9Y2N7 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
HIF3AQ9Y2N7 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HIF3AQ9Y2N7 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HIF3AQ9Y2N7 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC16.78■□□□□ 0.28
HIF3AQ9Y2N7 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC16.78■□□□□ 0.28
HIF3AQ9Y2N7 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
HIF3AQ9Y2N7 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC16.77■□□□□ 0.28
HIF3AQ9Y2N7 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
HIF3AQ9Y2N7 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HIF3AQ9Y2N7 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HIF3AQ9Y2N7 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
HIF3AQ9Y2N7 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
HIF3AQ9Y2N7 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HIF3AQ9Y2N7 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.28
HIF3AQ9Y2N7 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC16.77■□□□□ 0.28
HIF3AQ9Y2N7 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HIF3AQ9Y2N7 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC16.77■□□□□ 0.28
HIF3AQ9Y2N7 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
HIF3AQ9Y2N7 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC16.77■□□□□ 0.28
HIF3AQ9Y2N7 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HIF3AQ9Y2N7 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC16.77■□□□□ 0.28
HIF3AQ9Y2N7 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC16.77■□□□□ 0.28
HIF3AQ9Y2N7 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC16.77■□□□□ 0.28
HIF3AQ9Y2N7 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC16.77■□□□□ 0.28
HIF3AQ9Y2N7 SLC25A1P4-201ENST00000567977 778 ntBASIC16.77■□□□□ 0.28
HIF3AQ9Y2N7 AL049637.2-201ENST00000641778 930 ntBASIC16.77■□□□□ 0.28
HIF3AQ9Y2N7 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
HIF3AQ9Y2N7 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
HIF3AQ9Y2N7 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC16.77■□□□□ 0.28
HIF3AQ9Y2N7 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
HIF3AQ9Y2N7 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC16.77■□□□□ 0.28
HIF3AQ9Y2N7 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
HIF3AQ9Y2N7 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.27
HIF3AQ9Y2N7 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms