Protein–RNA interactions for Protein: Q9Y2D8

SSX2IP, Afadin- and alpha-actinin-binding protein, humanhuman

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX2IPQ9Y2D8 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
SSX2IPQ9Y2D8 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
SSX2IPQ9Y2D8 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
SSX2IPQ9Y2D8 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC19.95■□□□□ 0.78
SSX2IPQ9Y2D8 HLA-F-220ENST00000434407 884 ntBASIC19.95■□□□□ 0.78
SSX2IPQ9Y2D8 KRT8P26-201ENST00000534154 1276 ntBASIC19.95■□□□□ 0.78
SSX2IPQ9Y2D8 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC19.95■□□□□ 0.78
SSX2IPQ9Y2D8 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC19.95■□□□□ 0.78
SSX2IPQ9Y2D8 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC19.95■□□□□ 0.78
SSX2IPQ9Y2D8 NAA38-203ENST00000575071 553 ntTSL 2 BASIC19.95■□□□□ 0.78
SSX2IPQ9Y2D8 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
SSX2IPQ9Y2D8 AC092119.3-201ENST00000612618 583 ntBASIC19.95■□□□□ 0.78
SSX2IPQ9Y2D8 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC19.95■□□□□ 0.78
SSX2IPQ9Y2D8 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC19.95■□□□□ 0.78
SSX2IPQ9Y2D8 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC19.95■□□□□ 0.78
SSX2IPQ9Y2D8 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SSX2IPQ9Y2D8 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC19.95■□□□□ 0.78
SSX2IPQ9Y2D8 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
SSX2IPQ9Y2D8 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SSX2IPQ9Y2D8 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SSX2IPQ9Y2D8 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
SSX2IPQ9Y2D8 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SSX2IPQ9Y2D8 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
SSX2IPQ9Y2D8 Z82202.1-201ENST00000623446 1880 ntBASIC19.94■□□□□ 0.78
SSX2IPQ9Y2D8 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SSX2IPQ9Y2D8 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
SSX2IPQ9Y2D8 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC19.94■□□□□ 0.78
SSX2IPQ9Y2D8 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SSX2IPQ9Y2D8 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SSX2IPQ9Y2D8 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
SSX2IPQ9Y2D8 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SSX2IPQ9Y2D8 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC19.94■□□□□ 0.78
SSX2IPQ9Y2D8 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC19.94■□□□□ 0.78
SSX2IPQ9Y2D8 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SSX2IPQ9Y2D8 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SSX2IPQ9Y2D8 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC19.94■□□□□ 0.78
SSX2IPQ9Y2D8 PRELID1P1-202ENST00000567272 903 ntBASIC19.94■□□□□ 0.78
SSX2IPQ9Y2D8 PRR29-207ENST00000580752 458 ntTSL 3 BASIC19.94■□□□□ 0.78
SSX2IPQ9Y2D8 AL136038.4-201ENST00000603606 1261 ntBASIC19.94■□□□□ 0.78
SSX2IPQ9Y2D8 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SSX2IPQ9Y2D8 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC19.94■□□□□ 0.78
SSX2IPQ9Y2D8 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SSX2IPQ9Y2D8 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
SSX2IPQ9Y2D8 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC19.94■□□□□ 0.78
SSX2IPQ9Y2D8 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
SSX2IPQ9Y2D8 AC093525.10-201ENST00000625130 1569 ntBASIC19.94■□□□□ 0.78
SSX2IPQ9Y2D8 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
SSX2IPQ9Y2D8 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
SSX2IPQ9Y2D8 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
SSX2IPQ9Y2D8 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC19.94■□□□□ 0.78
SSX2IPQ9Y2D8 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
SSX2IPQ9Y2D8 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC19.94■□□□□ 0.78
SSX2IPQ9Y2D8 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC19.94■□□□□ 0.78
SSX2IPQ9Y2D8 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
SSX2IPQ9Y2D8 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SSX2IPQ9Y2D8 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SSX2IPQ9Y2D8 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC19.93■□□□□ 0.78
SSX2IPQ9Y2D8 KATNBL1P6-202ENST00000562413 1466 ntBASIC19.93■□□□□ 0.78
SSX2IPQ9Y2D8 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SSX2IPQ9Y2D8 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
SSX2IPQ9Y2D8 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC19.93■□□□□ 0.78
SSX2IPQ9Y2D8 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SSX2IPQ9Y2D8 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SSX2IPQ9Y2D8 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC19.93■□□□□ 0.78
SSX2IPQ9Y2D8 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC19.93■□□□□ 0.78
SSX2IPQ9Y2D8 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
SSX2IPQ9Y2D8 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC19.93■□□□□ 0.78
SSX2IPQ9Y2D8 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC19.93■□□□□ 0.78
SSX2IPQ9Y2D8 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC19.93■□□□□ 0.78
SSX2IPQ9Y2D8 WDR88-203ENST00000592765 651 ntTSL 5 BASIC19.93■□□□□ 0.78
SSX2IPQ9Y2D8 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC19.93■□□□□ 0.78
SSX2IPQ9Y2D8 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SSX2IPQ9Y2D8 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
SSX2IPQ9Y2D8 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC19.93■□□□□ 0.78
SSX2IPQ9Y2D8 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
SSX2IPQ9Y2D8 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
SSX2IPQ9Y2D8 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SSX2IPQ9Y2D8 AC016734.2-201ENST00000624325 1377 ntBASIC19.93■□□□□ 0.78
SSX2IPQ9Y2D8 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SSX2IPQ9Y2D8 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
SSX2IPQ9Y2D8 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SSX2IPQ9Y2D8 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SSX2IPQ9Y2D8 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SSX2IPQ9Y2D8 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC19.92■□□□□ 0.78
SSX2IPQ9Y2D8 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SSX2IPQ9Y2D8 AL162741.1-201ENST00000565563 1558 ntBASIC19.92■□□□□ 0.78
SSX2IPQ9Y2D8 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
SSX2IPQ9Y2D8 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
SSX2IPQ9Y2D8 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SSX2IPQ9Y2D8 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
SSX2IPQ9Y2D8 MIR662-201ENST00000384847 95 ntBASIC19.92■□□□□ 0.78
SSX2IPQ9Y2D8 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SSX2IPQ9Y2D8 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC19.92■□□□□ 0.78
SSX2IPQ9Y2D8 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SSX2IPQ9Y2D8 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC19.92■□□□□ 0.78
SSX2IPQ9Y2D8 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC19.92■□□□□ 0.78
SSX2IPQ9Y2D8 AL157888.1-201ENST00000631930 593 ntBASIC19.92■□□□□ 0.78
SSX2IPQ9Y2D8 VPS72-207ENST00000640458 689 ntTSL 5 BASIC19.92■□□□□ 0.78
SSX2IPQ9Y2D8 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC19.92■□□□□ 0.78
SSX2IPQ9Y2D8 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms