Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LINC00477Q96M19 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC13.95□□□□□ -0.18
LINC00477Q96M19 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC13.95□□□□□ -0.18
LINC00477Q96M19 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
LINC00477Q96M19 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC13.95□□□□□ -0.18
LINC00477Q96M19 AC026271.3-201ENST00000571884 352 ntBASIC13.95□□□□□ -0.18
LINC00477Q96M19 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
LINC00477Q96M19 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
LINC00477Q96M19 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC13.95□□□□□ -0.18
LINC00477Q96M19 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC13.95□□□□□ -0.18
LINC00477Q96M19 TBCB-214ENST00000629269 413 ntTSL 5 BASIC13.95□□□□□ -0.18
LINC00477Q96M19 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LINC00477Q96M19 KRT16P1-201ENST00000399124 1418 ntBASIC13.95□□□□□ -0.18
LINC00477Q96M19 KRT8P45-201ENST00000414328 1447 ntBASIC13.95□□□□□ -0.18
LINC00477Q96M19 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC13.95□□□□□ -0.18
LINC00477Q96M19 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
LINC00477Q96M19 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
LINC00477Q96M19 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC13.95□□□□□ -0.18
LINC00477Q96M19 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC13.95□□□□□ -0.18
LINC00477Q96M19 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
LINC00477Q96M19 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
LINC00477Q96M19 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
LINC00477Q96M19 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LINC00477Q96M19 AL357033.4-201ENST00000617703 1807 ntBASIC13.94□□□□□ -0.18
LINC00477Q96M19 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
LINC00477Q96M19 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC13.94□□□□□ -0.18
LINC00477Q96M19 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
LINC00477Q96M19 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC13.94□□□□□ -0.18
LINC00477Q96M19 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LINC00477Q96M19 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LINC00477Q96M19 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
LINC00477Q96M19 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LINC00477Q96M19 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
LINC00477Q96M19 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LINC00477Q96M19 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
LINC00477Q96M19 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LINC00477Q96M19 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LINC00477Q96M19 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
LINC00477Q96M19 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC13.94□□□□□ -0.18
LINC00477Q96M19 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LINC00477Q96M19 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
LINC00477Q96M19 RPS2P4-201ENST00000476944 856 ntBASIC13.94□□□□□ -0.18
LINC00477Q96M19 ADM-205ENST00000528544 586 ntTSL 2 BASIC13.94□□□□□ -0.18
LINC00477Q96M19 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC13.94□□□□□ -0.18
LINC00477Q96M19 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
LINC00477Q96M19 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC13.94□□□□□ -0.18
LINC00477Q96M19 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LINC00477Q96M19 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC13.94□□□□□ -0.18
LINC00477Q96M19 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC13.94□□□□□ -0.18
LINC00477Q96M19 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LINC00477Q96M19 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LINC00477Q96M19 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
LINC00477Q96M19 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC13.94□□□□□ -0.18
LINC00477Q96M19 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
LINC00477Q96M19 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC13.94□□□□□ -0.18
LINC00477Q96M19 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LINC00477Q96M19 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC13.93□□□□□ -0.18
LINC00477Q96M19 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
LINC00477Q96M19 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC13.93□□□□□ -0.18
LINC00477Q96M19 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC13.93□□□□□ -0.18
LINC00477Q96M19 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LINC00477Q96M19 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LINC00477Q96M19 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
LINC00477Q96M19 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LINC00477Q96M19 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
LINC00477Q96M19 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
LINC00477Q96M19 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
LINC00477Q96M19 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
LINC00477Q96M19 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LINC00477Q96M19 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LINC00477Q96M19 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LINC00477Q96M19 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
LINC00477Q96M19 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC13.93□□□□□ -0.18
LINC00477Q96M19 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC13.93□□□□□ -0.18
LINC00477Q96M19 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC13.93□□□□□ -0.18
LINC00477Q96M19 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
LINC00477Q96M19 CKBP1-201ENST00000565489 1086 ntBASIC13.93□□□□□ -0.18
LINC00477Q96M19 AC011298.2-201ENST00000617989 482 ntBASIC13.93□□□□□ -0.18
LINC00477Q96M19 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC13.93□□□□□ -0.18
LINC00477Q96M19 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
LINC00477Q96M19 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC13.93□□□□□ -0.18
LINC00477Q96M19 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC13.93□□□□□ -0.18
LINC00477Q96M19 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC13.93□□□□□ -0.18
LINC00477Q96M19 NOC2LP2-201ENST00000407594 1944 ntBASIC13.93□□□□□ -0.18
LINC00477Q96M19 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC13.93□□□□□ -0.18
LINC00477Q96M19 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
LINC00477Q96M19 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LINC00477Q96M19 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC13.93□□□□□ -0.18
LINC00477Q96M19 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC13.93□□□□□ -0.18
LINC00477Q96M19 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC13.93□□□□□ -0.18
LINC00477Q96M19 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC13.93□□□□□ -0.18
LINC00477Q96M19 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC13.93□□□□□ -0.18
LINC00477Q96M19 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LINC00477Q96M19 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LINC00477Q96M19 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LINC00477Q96M19 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC13.93□□□□□ -0.18
LINC00477Q96M19 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
LINC00477Q96M19 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LINC00477Q96M19 AR-207ENST00000612010 3896 ntTSL 5 BASIC13.92□□□□□ -0.18
LINC00477Q96M19 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms