Protein–RNA interactions for Protein: Q96JG6

VPS50, Syndetin, humanhuman

Predictions only

Length 964 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50Q96JG6 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC18.19■□□□□ 0.5
VPS50Q96JG6 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
VPS50Q96JG6 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC18.19■□□□□ 0.5
VPS50Q96JG6 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS50Q96JG6 PKD1P1-201ENST00000458669 6805 ntBASIC18.18■□□□□ 0.5
VPS50Q96JG6 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS50Q96JG6 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS50Q96JG6 LINC01568-207ENST00000641790 1380 ntBASIC18.18■□□□□ 0.5
VPS50Q96JG6 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS50Q96JG6 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS50Q96JG6 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC18.18■□□□□ 0.5
VPS50Q96JG6 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
VPS50Q96JG6 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
VPS50Q96JG6 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
VPS50Q96JG6 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS50Q96JG6 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
VPS50Q96JG6 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC18.18■□□□□ 0.5
VPS50Q96JG6 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC18.18■□□□□ 0.5
VPS50Q96JG6 AC004980.1-204ENST00000429707 299 ntBASIC18.18■□□□□ 0.5
VPS50Q96JG6 AC128688.1-201ENST00000487626 519 ntBASIC18.18■□□□□ 0.5
VPS50Q96JG6 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC18.18■□□□□ 0.5
VPS50Q96JG6 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC18.18■□□□□ 0.5
VPS50Q96JG6 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC18.18■□□□□ 0.5
VPS50Q96JG6 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC18.18■□□□□ 0.5
VPS50Q96JG6 CLN6-221ENST00000637494 765 ntTSL 5 BASIC18.18■□□□□ 0.5
VPS50Q96JG6 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS50Q96JG6 TEX21P-204ENST00000641479 1693 ntBASIC18.18■□□□□ 0.5
VPS50Q96JG6 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
VPS50Q96JG6 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC18.18■□□□□ 0.5
VPS50Q96JG6 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC18.18■□□□□ 0.5
VPS50Q96JG6 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
VPS50Q96JG6 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS50Q96JG6 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
VPS50Q96JG6 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC18.18■□□□□ 0.5
VPS50Q96JG6 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC18.17■□□□□ 0.5
VPS50Q96JG6 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS50Q96JG6 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC18.17■□□□□ 0.5
VPS50Q96JG6 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VPS50Q96JG6 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC18.17■□□□□ 0.5
VPS50Q96JG6 AC141586.3-201ENST00000562166 1838 ntBASIC18.17■□□□□ 0.5
VPS50Q96JG6 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS50Q96JG6 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC18.17■□□□□ 0.5
VPS50Q96JG6 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
VPS50Q96JG6 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC18.17■□□□□ 0.5
VPS50Q96JG6 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC18.17■□□□□ 0.5
VPS50Q96JG6 AC004951.3-201ENST00000418645 1148 ntBASIC18.17■□□□□ 0.5
VPS50Q96JG6 PTPA-216ENST00000432651 857 ntTSL 2 BASIC18.17■□□□□ 0.5
VPS50Q96JG6 B3GAT3P1-201ENST00000471720 806 ntBASIC18.17■□□□□ 0.5
VPS50Q96JG6 KRT18P21-201ENST00000515767 1272 ntBASIC18.17■□□□□ 0.5
VPS50Q96JG6 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC18.17■□□□□ 0.5
VPS50Q96JG6 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
VPS50Q96JG6 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS50Q96JG6 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VPS50Q96JG6 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS50Q96JG6 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS50Q96JG6 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
VPS50Q96JG6 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS50Q96JG6 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS50Q96JG6 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
VPS50Q96JG6 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC18.17■□□□□ 0.5
VPS50Q96JG6 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
VPS50Q96JG6 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
VPS50Q96JG6 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS50Q96JG6 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS50Q96JG6 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS50Q96JG6 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS50Q96JG6 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS50Q96JG6 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
VPS50Q96JG6 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC18.16■□□□□ 0.5
VPS50Q96JG6 MIR1224-201ENST00000408193 85 ntBASIC18.16■□□□□ 0.5
VPS50Q96JG6 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
VPS50Q96JG6 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
VPS50Q96JG6 AC097488.1-201ENST00000507834 756 ntBASIC18.16■□□□□ 0.5
VPS50Q96JG6 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC18.16■□□□□ 0.5
VPS50Q96JG6 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC18.16■□□□□ 0.5
VPS50Q96JG6 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
VPS50Q96JG6 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
VPS50Q96JG6 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS50Q96JG6 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS50Q96JG6 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
VPS50Q96JG6 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC18.16■□□□□ 0.5
VPS50Q96JG6 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS50Q96JG6 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
VPS50Q96JG6 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS50Q96JG6 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS50Q96JG6 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS50Q96JG6 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC18.15■□□□□ 0.5
VPS50Q96JG6 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS50Q96JG6 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
VPS50Q96JG6 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC18.15■□□□□ 0.5
VPS50Q96JG6 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC18.15■□□□□ 0.5
VPS50Q96JG6 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
VPS50Q96JG6 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC18.15■□□□□ 0.5
VPS50Q96JG6 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
VPS50Q96JG6 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC18.15■□□□□ 0.5
VPS50Q96JG6 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC18.15■□□□□ 0.5
VPS50Q96JG6 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
VPS50Q96JG6 TK2-213ENST00000563369 882 ntTSL 5 BASIC18.15■□□□□ 0.5
VPS50Q96JG6 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC18.15■□□□□ 0.5
VPS50Q96JG6 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 77.3 ms