Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 KRT18P23-201ENST00000435622 1283 ntBASIC18.94■□□□□ 0.62
SHROOM3Q8TF72 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC18.94■□□□□ 0.62
SHROOM3Q8TF72 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC18.94■□□□□ 0.62
SHROOM3Q8TF72 ETFA-216ENST00000560726 942 ntTSL 3 BASIC18.94■□□□□ 0.62
SHROOM3Q8TF72 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC18.94■□□□□ 0.62
SHROOM3Q8TF72 AC083849.1-201ENST00000615227 514 ntBASIC18.94■□□□□ 0.62
SHROOM3Q8TF72 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC18.94■□□□□ 0.62
SHROOM3Q8TF72 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SHROOM3Q8TF72 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
SHROOM3Q8TF72 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SHROOM3Q8TF72 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SHROOM3Q8TF72 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC18.94■□□□□ 0.62
SHROOM3Q8TF72 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC18.94■□□□□ 0.62
SHROOM3Q8TF72 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SHROOM3Q8TF72 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SHROOM3Q8TF72 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SHROOM3Q8TF72 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SHROOM3Q8TF72 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC18.93■□□□□ 0.62
SHROOM3Q8TF72 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
SHROOM3Q8TF72 Telomerase-vert.1-201ENST00000363312 438 ntBASIC18.93■□□□□ 0.62
SHROOM3Q8TF72 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SHROOM3Q8TF72 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
SHROOM3Q8TF72 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SHROOM3Q8TF72 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
SHROOM3Q8TF72 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC18.93■□□□□ 0.62
SHROOM3Q8TF72 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SHROOM3Q8TF72 KRT18P56-201ENST00000507275 550 ntBASIC18.93■□□□□ 0.62
SHROOM3Q8TF72 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC18.93■□□□□ 0.62
SHROOM3Q8TF72 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC18.93■□□□□ 0.62
SHROOM3Q8TF72 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC18.93■□□□□ 0.62
SHROOM3Q8TF72 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC18.93■□□□□ 0.62
SHROOM3Q8TF72 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SHROOM3Q8TF72 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC18.93■□□□□ 0.62
SHROOM3Q8TF72 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC18.93■□□□□ 0.62
SHROOM3Q8TF72 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC18.93■□□□□ 0.62
SHROOM3Q8TF72 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC18.93■□□□□ 0.62
SHROOM3Q8TF72 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SHROOM3Q8TF72 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SHROOM3Q8TF72 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC18.93■□□□□ 0.62
SHROOM3Q8TF72 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC18.93■□□□□ 0.62
SHROOM3Q8TF72 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC18.93■□□□□ 0.62
SHROOM3Q8TF72 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC18.93■□□□□ 0.62
SHROOM3Q8TF72 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SHROOM3Q8TF72 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SHROOM3Q8TF72 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC18.93■□□□□ 0.62
SHROOM3Q8TF72 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SHROOM3Q8TF72 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC18.93■□□□□ 0.62
SHROOM3Q8TF72 CD81-212ENST00000526072 1172 ntTSL 5 BASIC18.93■□□□□ 0.62
SHROOM3Q8TF72 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SHROOM3Q8TF72 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
SHROOM3Q8TF72 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
SHROOM3Q8TF72 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SHROOM3Q8TF72 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SHROOM3Q8TF72 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SHROOM3Q8TF72 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC18.92■□□□□ 0.62
SHROOM3Q8TF72 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
SHROOM3Q8TF72 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC18.92■□□□□ 0.62
SHROOM3Q8TF72 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC18.92■□□□□ 0.62
SHROOM3Q8TF72 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC18.92■□□□□ 0.62
SHROOM3Q8TF72 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SHROOM3Q8TF72 YBX1P2-201ENST00000489612 999 ntBASIC18.92■□□□□ 0.62
SHROOM3Q8TF72 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC18.92■□□□□ 0.62
SHROOM3Q8TF72 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
SHROOM3Q8TF72 AL023973.1-201ENST00000624619 620 ntBASIC18.92■□□□□ 0.62
SHROOM3Q8TF72 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SHROOM3Q8TF72 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC18.92■□□□□ 0.62
SHROOM3Q8TF72 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC18.92■□□□□ 0.62
SHROOM3Q8TF72 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
SHROOM3Q8TF72 UROS-202ENST00000368778 1556 ntTSL 2 BASIC18.92■□□□□ 0.62
SHROOM3Q8TF72 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SHROOM3Q8TF72 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SHROOM3Q8TF72 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC18.92■□□□□ 0.62
SHROOM3Q8TF72 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
SHROOM3Q8TF72 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC18.92■□□□□ 0.62
SHROOM3Q8TF72 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC18.92■□□□□ 0.62
SHROOM3Q8TF72 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
SHROOM3Q8TF72 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
SHROOM3Q8TF72 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC18.92■□□□□ 0.62
SHROOM3Q8TF72 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
SHROOM3Q8TF72 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC18.92■□□□□ 0.62
SHROOM3Q8TF72 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SHROOM3Q8TF72 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC18.91■□□□□ 0.62
SHROOM3Q8TF72 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SHROOM3Q8TF72 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
SHROOM3Q8TF72 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
SHROOM3Q8TF72 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SHROOM3Q8TF72 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
SHROOM3Q8TF72 KRT18P48-201ENST00000434763 852 ntBASIC18.91■□□□□ 0.62
SHROOM3Q8TF72 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SHROOM3Q8TF72 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC18.91■□□□□ 0.62
SHROOM3Q8TF72 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SHROOM3Q8TF72 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC18.91■□□□□ 0.62
SHROOM3Q8TF72 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC18.91■□□□□ 0.62
SHROOM3Q8TF72 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
SHROOM3Q8TF72 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC18.91■□□□□ 0.62
SHROOM3Q8TF72 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SHROOM3Q8TF72 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SHROOM3Q8TF72 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
SHROOM3Q8TF72 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SHROOM3Q8TF72 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms