Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 CIB2-208ENST00000560618 804 ntTSL 2 BASIC17.84■□□□□ 0.45
COL28A1Q2UY09 AC012615.1-201ENST00000565797 1299 ntBASIC17.84■□□□□ 0.45
COL28A1Q2UY09 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
COL28A1Q2UY09 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC17.84■□□□□ 0.45
COL28A1Q2UY09 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC17.84■□□□□ 0.45
COL28A1Q2UY09 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL28A1Q2UY09 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL28A1Q2UY09 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC17.84■□□□□ 0.45
COL28A1Q2UY09 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL28A1Q2UY09 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL28A1Q2UY09 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL28A1Q2UY09 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
COL28A1Q2UY09 AC098818.2-201ENST00000564925 2320 ntBASIC17.83■□□□□ 0.45
COL28A1Q2UY09 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
COL28A1Q2UY09 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC17.83■□□□□ 0.45
COL28A1Q2UY09 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
COL28A1Q2UY09 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
COL28A1Q2UY09 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
COL28A1Q2UY09 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
COL28A1Q2UY09 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
COL28A1Q2UY09 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC17.83■□□□□ 0.45
COL28A1Q2UY09 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
COL28A1Q2UY09 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
COL28A1Q2UY09 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
COL28A1Q2UY09 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL28A1Q2UY09 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
COL28A1Q2UY09 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC17.83■□□□□ 0.44
COL28A1Q2UY09 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC17.83■□□□□ 0.44
COL28A1Q2UY09 GGCT-205ENST00000409436 954 ntTSL 3 BASIC17.83■□□□□ 0.44
COL28A1Q2UY09 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC17.83■□□□□ 0.44
COL28A1Q2UY09 TOB2P1-201ENST00000469761 992 ntBASIC17.83■□□□□ 0.44
COL28A1Q2UY09 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC17.83■□□□□ 0.44
COL28A1Q2UY09 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC17.83■□□□□ 0.44
COL28A1Q2UY09 AP001005.1-201ENST00000571755 1248 ntBASIC17.83■□□□□ 0.44
COL28A1Q2UY09 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC17.83■□□□□ 0.44
COL28A1Q2UY09 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
COL28A1Q2UY09 AC138894.3-201ENST00000603787 634 ntBASIC17.83■□□□□ 0.44
COL28A1Q2UY09 AL353801.3-201ENST00000609898 542 ntBASIC17.83■□□□□ 0.44
COL28A1Q2UY09 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC17.83■□□□□ 0.44
COL28A1Q2UY09 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL28A1Q2UY09 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC17.83■□□□□ 0.44
COL28A1Q2UY09 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC17.83■□□□□ 0.44
COL28A1Q2UY09 PWWP2AP1-201ENST00000429776 2273 ntBASIC17.83■□□□□ 0.44
COL28A1Q2UY09 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
COL28A1Q2UY09 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL28A1Q2UY09 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
COL28A1Q2UY09 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
COL28A1Q2UY09 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL28A1Q2UY09 AL158211.5-201ENST00000623583 2518 ntBASIC17.82■□□□□ 0.44
COL28A1Q2UY09 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC17.82■□□□□ 0.44
COL28A1Q2UY09 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL28A1Q2UY09 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC17.82■□□□□ 0.44
COL28A1Q2UY09 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL28A1Q2UY09 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL28A1Q2UY09 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL28A1Q2UY09 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
COL28A1Q2UY09 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL28A1Q2UY09 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL28A1Q2UY09 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL28A1Q2UY09 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL28A1Q2UY09 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL28A1Q2UY09 TREX1-205ENST00000625293 1783 ntBASIC17.82■□□□□ 0.44
COL28A1Q2UY09 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
COL28A1Q2UY09 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL28A1Q2UY09 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC17.82■□□□□ 0.44
COL28A1Q2UY09 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC17.82■□□□□ 0.44
COL28A1Q2UY09 DRAXINP1-201ENST00000437611 948 ntBASIC17.82■□□□□ 0.44
COL28A1Q2UY09 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
COL28A1Q2UY09 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC17.82■□□□□ 0.44
COL28A1Q2UY09 AL691403.2-201ENST00000618460 490 ntBASIC17.82■□□□□ 0.44
COL28A1Q2UY09 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL28A1Q2UY09 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
COL28A1Q2UY09 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL28A1Q2UY09 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL28A1Q2UY09 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL28A1Q2UY09 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
COL28A1Q2UY09 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC17.81■□□□□ 0.44
COL28A1Q2UY09 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC17.81■□□□□ 0.44
COL28A1Q2UY09 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL28A1Q2UY09 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL28A1Q2UY09 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL28A1Q2UY09 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC17.81■□□□□ 0.44
COL28A1Q2UY09 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
COL28A1Q2UY09 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL28A1Q2UY09 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
COL28A1Q2UY09 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL28A1Q2UY09 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC17.81■□□□□ 0.44
COL28A1Q2UY09 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
COL28A1Q2UY09 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC17.81■□□□□ 0.44
COL28A1Q2UY09 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC17.81■□□□□ 0.44
COL28A1Q2UY09 GLRB-205ENST00000512619 728 ntTSL 3 BASIC17.81■□□□□ 0.44
COL28A1Q2UY09 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
COL28A1Q2UY09 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
COL28A1Q2UY09 AL160286.2-201ENST00000567150 934 ntBASIC17.81■□□□□ 0.44
COL28A1Q2UY09 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC17.81■□□□□ 0.44
COL28A1Q2UY09 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC17.81■□□□□ 0.44
COL28A1Q2UY09 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC17.81■□□□□ 0.44
COL28A1Q2UY09 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC17.81■□□□□ 0.44
COL28A1Q2UY09 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC17.81■□□□□ 0.44
COL28A1Q2UY09 AL162741.1-201ENST00000565563 1558 ntBASIC17.81■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 16.9 ms