Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RPL39P62891 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
RPL39P62891 MTMR9LP-203ENST00000426597 1545 ntBASIC13.15□□□□□ -0.3
RPL39P62891 FLYWCH1P1-201ENST00000460917 1874 ntBASIC13.15□□□□□ -0.3
RPL39P62891 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
RPL39P62891 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC13.15□□□□□ -0.3
RPL39P62891 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RPL39P62891 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
RPL39P62891 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RPL39P62891 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
RPL39P62891 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
RPL39P62891 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
RPL39P62891 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RPL39P62891 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC13.15□□□□□ -0.3
RPL39P62891 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC13.15□□□□□ -0.3
RPL39P62891 MAX-217ENST00000557277 728 ntTSL 3 BASIC13.15□□□□□ -0.3
RPL39P62891 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
RPL39P62891 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC13.15□□□□□ -0.3
RPL39P62891 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC13.15□□□□□ -0.3
RPL39P62891 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC13.15□□□□□ -0.3
RPL39P62891 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC13.15□□□□□ -0.3
RPL39P62891 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC13.15□□□□□ -0.3
RPL39P62891 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC13.15□□□□□ -0.3
RPL39P62891 AC138028.4-201ENST00000564984 1845 ntBASIC13.15□□□□□ -0.3
RPL39P62891 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
RPL39P62891 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RPL39P62891 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RPL39P62891 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
RPL39P62891 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RPL39P62891 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
RPL39P62891 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC13.15□□□□□ -0.3
RPL39P62891 NFYC-AS1-201ENST00000606277 1687 ntBASIC13.15□□□□□ -0.31
RPL39P62891 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
RPL39P62891 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
RPL39P62891 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC13.14□□□□□ -0.31
RPL39P62891 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
RPL39P62891 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC13.14□□□□□ -0.31
RPL39P62891 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
RPL39P62891 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
RPL39P62891 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
RPL39P62891 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC13.14□□□□□ -0.31
RPL39P62891 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
RPL39P62891 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
RPL39P62891 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.31
RPL39P62891 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
RPL39P62891 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC13.14□□□□□ -0.31
RPL39P62891 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC13.14□□□□□ -0.31
RPL39P62891 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC13.14□□□□□ -0.31
RPL39P62891 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC13.14□□□□□ -0.31
RPL39P62891 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC13.14□□□□□ -0.31
RPL39P62891 REXO1L9P-201ENST00000604264 2108 ntBASIC13.14□□□□□ -0.31
RPL39P62891 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
RPL39P62891 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC13.14□□□□□ -0.31
RPL39P62891 RCC2P6-201ENST00000526625 1557 ntBASIC13.14□□□□□ -0.31
RPL39P62891 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC13.14□□□□□ -0.31
RPL39P62891 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC13.14□□□□□ -0.31
RPL39P62891 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC13.14□□□□□ -0.31
RPL39P62891 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
RPL39P62891 AC093677.2-201ENST00000600169 1863 ntBASIC13.14□□□□□ -0.31
RPL39P62891 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
RPL39P62891 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC13.14□□□□□ -0.31
RPL39P62891 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
RPL39P62891 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
RPL39P62891 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
RPL39P62891 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
RPL39P62891 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC13.13□□□□□ -0.31
RPL39P62891 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
RPL39P62891 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC13.13□□□□□ -0.31
RPL39P62891 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
RPL39P62891 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC13.13□□□□□ -0.31
RPL39P62891 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
RPL39P62891 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC13.13□□□□□ -0.31
RPL39P62891 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC13.13□□□□□ -0.31
RPL39P62891 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC13.13□□□□□ -0.31
RPL39P62891 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
RPL39P62891 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
RPL39P62891 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC13.13□□□□□ -0.31
RPL39P62891 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC13.13□□□□□ -0.31
RPL39P62891 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
RPL39P62891 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
RPL39P62891 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
RPL39P62891 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
RPL39P62891 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
RPL39P62891 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
RPL39P62891 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
RPL39P62891 GNE-204ENST00000539208 2190 ntTSL 2 BASIC13.13□□□□□ -0.31
RPL39P62891 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
RPL39P62891 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
RPL39P62891 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC13.13□□□□□ -0.31
RPL39P62891 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
RPL39P62891 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC13.13□□□□□ -0.31
RPL39P62891 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC13.13□□□□□ -0.31
RPL39P62891 ME3-201ENST00000323418 1068 ntTSL 5 BASIC13.13□□□□□ -0.31
RPL39P62891 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
RPL39P62891 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
RPL39P62891 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
RPL39P62891 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
RPL39P62891 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC13.13□□□□□ -0.31
RPL39P62891 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC13.13□□□□□ -0.31
RPL39P62891 AC133552.2-202ENST00000575694 574 ntBASIC13.13□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms