Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CDH6P55285 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
CDH6P55285 EFTUD1P1-204ENST00000560401 1798 ntBASIC19.34■□□□□ 0.69
CDH6P55285 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC19.34■□□□□ 0.69
CDH6P55285 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
CDH6P55285 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CDH6P55285 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CDH6P55285 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CDH6P55285 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CDH6P55285 MIR564-202ENST00000385049 94 ntBASIC19.34■□□□□ 0.69
CDH6P55285 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC19.34■□□□□ 0.69
CDH6P55285 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
CDH6P55285 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CDH6P55285 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC19.34■□□□□ 0.69
CDH6P55285 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CDH6P55285 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CDH6P55285 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC19.34■□□□□ 0.69
CDH6P55285 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CDH6P55285 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC19.34■□□□□ 0.69
CDH6P55285 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
CDH6P55285 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CDH6P55285 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
CDH6P55285 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CDH6P55285 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC19.33■□□□□ 0.69
CDH6P55285 AC135050.7-201ENST00000624508 2218 ntBASIC19.33■□□□□ 0.69
CDH6P55285 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
CDH6P55285 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC19.33■□□□□ 0.69
CDH6P55285 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.69
CDH6P55285 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC19.33■□□□□ 0.69
CDH6P55285 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
CDH6P55285 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
CDH6P55285 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
CDH6P55285 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC19.33■□□□□ 0.68
CDH6P55285 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC19.33■□□□□ 0.68
CDH6P55285 SLC25A1P2-201ENST00000430693 912 ntBASIC19.33■□□□□ 0.68
CDH6P55285 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CDH6P55285 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CDH6P55285 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
CDH6P55285 AL023803.3-201ENST00000615559 522 ntBASIC19.33■□□□□ 0.68
CDH6P55285 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CDH6P55285 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CDH6P55285 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CDH6P55285 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC19.33■□□□□ 0.68
CDH6P55285 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC19.33■□□□□ 0.68
CDH6P55285 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
CDH6P55285 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CDH6P55285 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CDH6P55285 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC19.33■□□□□ 0.68
CDH6P55285 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC19.33■□□□□ 0.68
CDH6P55285 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
CDH6P55285 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC19.33■□□□□ 0.68
CDH6P55285 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CDH6P55285 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CDH6P55285 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
CDH6P55285 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CDH6P55285 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC19.32■□□□□ 0.68
CDH6P55285 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC19.32■□□□□ 0.68
CDH6P55285 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC19.32■□□□□ 0.68
CDH6P55285 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CDH6P55285 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC19.32■□□□□ 0.68
CDH6P55285 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
CDH6P55285 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
CDH6P55285 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CDH6P55285 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CDH6P55285 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
CDH6P55285 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC19.32■□□□□ 0.68
CDH6P55285 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC19.32■□□□□ 0.68
CDH6P55285 TSPY15P-201ENST00000457163 923 ntBASIC19.32■□□□□ 0.68
CDH6P55285 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC19.32■□□□□ 0.68
CDH6P55285 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC19.32■□□□□ 0.68
CDH6P55285 AP003041.3-201ENST00000527151 707 ntBASIC19.32■□□□□ 0.68
CDH6P55285 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CDH6P55285 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC19.32■□□□□ 0.68
CDH6P55285 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CDH6P55285 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
CDH6P55285 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC19.32■□□□□ 0.68
CDH6P55285 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CDH6P55285 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
CDH6P55285 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
CDH6P55285 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
CDH6P55285 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC19.32■□□□□ 0.68
CDH6P55285 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CDH6P55285 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CDH6P55285 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CDH6P55285 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
CDH6P55285 AC007613.1-201ENST00000572811 2597 ntBASIC19.32■□□□□ 0.68
CDH6P55285 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CDH6P55285 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CDH6P55285 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CDH6P55285 BICD1-207ENST00000551848 1962 ntBASIC19.32■□□□□ 0.68
CDH6P55285 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
CDH6P55285 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CDH6P55285 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CDH6P55285 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
CDH6P55285 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CDH6P55285 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC19.31■□□□□ 0.68
CDH6P55285 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CDH6P55285 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC19.31■□□□□ 0.68
CDH6P55285 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CDH6P55285 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms