Protein–RNA interactions for Protein: P35244

RPA3, Replication protein A 14 kDa subunit, humanhuman

Predicted RBP Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3P35244 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RPA3P35244 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC18.8■□□□□ 0.6
RPA3P35244 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC18.8■□□□□ 0.6
RPA3P35244 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RPA3P35244 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
RPA3P35244 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
RPA3P35244 AC139713.2-201ENST00000641328 2723 ntBASIC18.8■□□□□ 0.6
RPA3P35244 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RPA3P35244 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
RPA3P35244 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
RPA3P35244 HEIH-201ENST00000623091 1652 ntBASIC18.79■□□□□ 0.6
RPA3P35244 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
RPA3P35244 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC18.79■□□□□ 0.6
RPA3P35244 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC18.79■□□□□ 0.6
RPA3P35244 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC18.79■□□□□ 0.6
RPA3P35244 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC18.79■□□□□ 0.6
RPA3P35244 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RPA3P35244 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
RPA3P35244 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.79■□□□□ 0.6
RPA3P35244 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
RPA3P35244 AL353807.1-201ENST00000427475 662 ntBASIC18.79■□□□□ 0.6
RPA3P35244 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.79■□□□□ 0.6
RPA3P35244 TSPY23P-201ENST00000440136 739 ntBASIC18.79■□□□□ 0.6
RPA3P35244 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.79■□□□□ 0.6
RPA3P35244 AP002982.1-201ENST00000492365 877 ntBASIC18.79■□□□□ 0.6
RPA3P35244 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
RPA3P35244 RARRES2P10-201ENST00000564312 460 ntBASIC18.79■□□□□ 0.6
RPA3P35244 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC18.79■□□□□ 0.6
RPA3P35244 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC18.79■□□□□ 0.6
RPA3P35244 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC18.79■□□□□ 0.6
RPA3P35244 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
RPA3P35244 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC18.79■□□□□ 0.6
RPA3P35244 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RPA3P35244 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
RPA3P35244 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC18.79■□□□□ 0.6
RPA3P35244 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC18.79■□□□□ 0.6
RPA3P35244 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC18.79■□□□□ 0.6
RPA3P35244 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RPA3P35244 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RPA3P35244 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
RPA3P35244 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RPA3P35244 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RPA3P35244 AC134043.2-201ENST00000624206 2238 ntBASIC18.78■□□□□ 0.6
RPA3P35244 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC18.78■□□□□ 0.6
RPA3P35244 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC18.78■□□□□ 0.6
RPA3P35244 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC18.78■□□□□ 0.6
RPA3P35244 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RPA3P35244 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC18.78■□□□□ 0.6
RPA3P35244 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
RPA3P35244 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RPA3P35244 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC18.78■□□□□ 0.6
RPA3P35244 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC18.78■□□□□ 0.6
RPA3P35244 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
RPA3P35244 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
RPA3P35244 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
RPA3P35244 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
RPA3P35244 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RPA3P35244 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
RPA3P35244 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC18.78■□□□□ 0.6
RPA3P35244 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
RPA3P35244 LINC00896-202ENST00000609602 2128 ntBASIC18.78■□□□□ 0.6
RPA3P35244 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
RPA3P35244 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RPA3P35244 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
RPA3P35244 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RPA3P35244 MME-217ENST00000616757 1315 ntTSL 5 BASIC18.77■□□□□ 0.6
RPA3P35244 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.77■□□□□ 0.6
RPA3P35244 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
RPA3P35244 AL135905.2-201ENST00000584934 1404 ntBASIC18.77■□□□□ 0.6
RPA3P35244 AC012313.1-201ENST00000593393 3059 ntBASIC18.77■□□□□ 0.6
RPA3P35244 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RPA3P35244 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
RPA3P35244 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RPA3P35244 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
RPA3P35244 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC18.77■□□□□ 0.6
RPA3P35244 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
RPA3P35244 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC18.77■□□□□ 0.6
RPA3P35244 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC18.77■□□□□ 0.6
RPA3P35244 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RPA3P35244 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RPA3P35244 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
RPA3P35244 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RPA3P35244 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RPA3P35244 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
RPA3P35244 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RPA3P35244 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RPA3P35244 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RPA3P35244 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC18.77■□□□□ 0.6
RPA3P35244 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC18.77■□□□□ 0.6
RPA3P35244 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.59
RPA3P35244 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.59
RPA3P35244 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
RPA3P35244 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC18.77■□□□□ 0.59
RPA3P35244 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.59
RPA3P35244 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC18.77■□□□□ 0.59
RPA3P35244 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
RPA3P35244 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
RPA3P35244 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
RPA3P35244 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
RPA3P35244 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms