Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 SMIM7-205ENST00000463051 602 ntTSL 312.53□□□□□ -0.41e-7■■□□□ 13.6
YBX3P16989 AC104619.1-201ENST00000459634 631 ntBASIC11.51□□□□□ -0.571e-7■■□□□ 13.6
YBX3P16989 SMIM7-201ENST00000358726 850 ntTSL 2 BASIC11.22□□□□□ -0.611e-7■■□□□ 13.6
YBX3P16989 SMIM7-212ENST00000594507 430 ntTSL 310.38□□□□□ -0.751e-7■■□□□ 13.6
YBX3P16989 SMIM7-203ENST00000461364 601 ntTSL 29.35□□□□□ -0.911e-7■■□□□ 13.6
YBX3P16989 ASPM-203ENST00000367409 10887 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.081e-7■■□□□ 13.6
YBX3P16989 ATP11C-209ENST00000485626 643 ntTSL 57.33□□□□□ -1.241e-7■■□□□ 13.6
YBX3P16989 TAB3-206ENST00000467136 7987 ntTSL 55.68□□□□□ -1.51e-7■■□□□ 13.6
YBX3P16989 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC4.63□□□□□ -1.671e-7■■□□□ 13.6
YBX3P16989 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.89□□□□□ -1.951e-7■■□□□ 13.6
YBX3P16989 PSMC5-203ENST00000578570 1680 ntTSL 225.14■■□□□ 1.622e-7■■□□□ 13.6
YBX3P16989 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC22.02■■□□□ 1.122e-7■■□□□ 13.6
YBX3P16989 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC20.39■□□□□ 0.852e-7■■□□□ 13.6
YBX3P16989 PSMC5-212ENST00000581882 1474 ntTSL 5 BASIC17.32■□□□□ 0.362e-7■■□□□ 13.6
YBX3P16989 PSMC5-201ENST00000310144 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.362e-7■■□□□ 13.6
YBX3P16989 PSMC5-205ENST00000579147 2586 ntTSL 214.99□□□□□ -0.012e-7■■□□□ 13.6
YBX3P16989 PSMC5-221ENST00000585242 1178 ntTSL 512.6□□□□□ -0.392e-7■■□□□ 13.6
YBX3P16989 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC27.17■■□□□ 1.941e-9■■□□□ 13.5
YBX3P16989 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC26.21■■□□□ 1.791e-9■■□□□ 13.5
YBX3P16989 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC24.27■■□□□ 1.481e-9■■□□□ 13.5
YBX3P16989 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC22.58■■□□□ 1.211e-9■■□□□ 13.5
YBX3P16989 ORC2-207ENST00000487853 919 ntTSL 314.72□□□□□ -0.052e-7■■□□□ 13.5
YBX3P16989 ORC2-204ENST00000464147 2185 ntTSL 57.95□□□□□ -1.142e-7■■□□□ 13.5
YBX3P16989 RPL35A-204ENST00000442341 517 ntTSL 36.39□□□□□ -1.391e-14■■□□□ 13.5
YBX3P16989 NBAS-207ENST00000441755 844 ntTSL 36.92□□□□□ -1.32e-8■■□□□ 13.5
YBX3P16989 CNN2-212ENST00000607102 307 ntTSL 1 (best)19.26■□□□□ 0.675e-7■■□□□ 13.5
YBX3P16989 CNN2-210ENST00000569352 731 ntTSL 518.38■□□□□ 0.535e-7■■□□□ 13.5
YBX3P16989 CNN2-204ENST00000562075 623 ntTSL 1 (best)16.71■□□□□ 0.275e-7■■□□□ 13.5
YBX3P16989 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC25.32■■□□□ 1.646e-9■■□□□ 13.5
YBX3P16989 VEGFB-202ENST00000426086 979 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.696e-9■■□□□ 13.5
YBX3P16989 VEGFB-204ENST00000543462 663 ntTSL 212.63□□□□□ -0.396e-9■■□□□ 13.5
YBX3P16989 AHCYL1-205ENST00000475081 795 ntTSL 529.38■■■□□ 2.291e-7■■□□□ 13.5
YBX3P16989 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC36.21■■■■□ 3.397e-8■■□□□ 13.5
YBX3P16989 PRKDC-208ENST00000536710 554 ntTSL 47.25□□□□□ -1.252e-8■■□□□ 13.5
YBX3P16989 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.053e-12■■□□□ 13.5
YBX3P16989 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC22.06■■□□□ 1.122e-34■■□□□ 13.5
YBX3P16989 RPL21-202ENST00000311549 815 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.022e-34■■□□□ 13.5
YBX3P16989 RPL21-201ENST00000272274 616 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.22e-34■■□□□ 13.5
YBX3P16989 RPL21-204ENST00000326092 641 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.312e-34■■□□□ 13.5
YBX3P16989 RPL21-205ENST00000461690 681 ntTSL 58.8□□□□□ -12e-34■■□□□ 13.5
YBX3P16989 RPL21-208ENST00000483765 453 ntTSL 36.92□□□□□ -1.32e-34■■□□□ 13.5
YBX3P16989 RPL21-209ENST00000485756 675 ntTSL 24.31□□□□□ -1.722e-34■■□□□ 13.5
YBX3P16989 SMYD3-203ENST00000391836 732 ntTSL 516.66■□□□□ 0.262e-7■■□□□ 13.5
YBX3P16989 SMYD3-216ENST00000492487 634 ntTSL 310.26□□□□□ -0.772e-7■■□□□ 13.5
YBX3P16989 SMYD3-208ENST00000464398 540 ntTSL 310.06□□□□□ -0.82e-7■■□□□ 13.5
YBX3P16989 SMYD3-217ENST00000493441 823 ntTSL 29.11□□□□□ -0.952e-7■■□□□ 13.5
YBX3P16989 SMYD3-213ENST00000488153 653 ntTSL 37.14□□□□□ -1.272e-7■■□□□ 13.5
YBX3P16989 WDFY1-202ENST00000429915 719 ntTSL 319.7■□□□□ 0.742e-6■■□□□ 13.5
YBX3P16989 WDFY1-204ENST00000483061 864 ntTSL 216.08■□□□□ 0.162e-6■■□□□ 13.5
YBX3P16989 WDFY1-201ENST00000233055 4660 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.142e-6■■□□□ 13.5
YBX3P16989 MTFR1L-208ENST00000469815 893 ntTSL 318.3■□□□□ 0.525e-7■■□□□ 13.5
YBX3P16989 MTFR1L-215ENST00000524618 1217 ntTSL 2 BASIC11.73□□□□□ -0.535e-7■■□□□ 13.5
YBX3P16989 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.218e-11■■□□□ 13.5
YBX3P16989 PPP2R5C-220ENST00000556373 285 ntTSL 510.77□□□□□ -0.693e-28■■□□□ 13.5
YBX3P16989 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC34.08■■■■□ 3.054e-6■■□□□ 13.5
YBX3P16989 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC29.91■■■□□ 2.384e-6■■□□□ 13.5
YBX3P16989 ACOT7-205ENST00000377860 1472 ntTSL 1 (best)21.52■■□□□ 1.044e-6■■□□□ 13.5
YBX3P16989 ACOT7-206ENST00000418124 1564 ntTSL 1 (best)19.97■□□□□ 0.794e-6■■□□□ 13.5
YBX3P16989 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.394e-6■■□□□ 13.5
YBX3P16989 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.396e-7■■□□□ 13.5
YBX3P16989 HMG20B-216ENST00000585900 741 ntTSL 324.32■■□□□ 1.486e-7■■□□□ 13.5
YBX3P16989 HMG20B-213ENST00000488973 2434 ntTSL 1 (best)19.73■□□□□ 0.756e-7■■□□□ 13.5
YBX3P16989 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC17.75■□□□□ 0.436e-10■■□□□ 13.5
YBX3P16989 TIMP1-201ENST00000218388 892 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.196e-10■■□□□ 13.5
YBX3P16989 TIMP1-202ENST00000377017 626 ntTSL 2 BASIC16.21■□□□□ 0.196e-10■■□□□ 13.5
YBX3P16989 TUFM-203ENST00000565012 966 ntTSL 522.59■■□□□ 1.212e-11■■□□□ 13.5
YBX3P16989 MRPS2-203ENST00000453385 810 ntTSL 227.86■■■□□ 2.051e-7■■□□□ 13.5
YBX3P16989 MRPS2-208ENST00000488610 928 ntTSL 324.7■■□□□ 1.541e-7■■□□□ 13.5
YBX3P16989 MRPS2-207ENST00000485333 881 ntTSL 224.57■■□□□ 1.521e-7■■□□□ 13.5
YBX3P16989 MRPS2-205ENST00000472852 854 ntTSL 324.4■■□□□ 1.51e-7■■□□□ 13.5
YBX3P16989 CLUH-211ENST00000575014 4959 ntAPPRIS ALT2 TSL 518.35■□□□□ 0.539e-9■■□□□ 13.5
YBX3P16989 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC17.36■□□□□ 0.379e-9■■□□□ 13.5
YBX3P16989 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC16.01■□□□□ 0.159e-9■■□□□ 13.5
YBX3P16989 CLUH-210ENST00000574426 3844 ntAPPRIS ALT2 TSL 515.56■□□□□ 0.089e-9■■□□□ 13.5
YBX3P16989 CLUH-206ENST00000572129 480 ntTSL 514.42□□□□□ -0.19e-9■■□□□ 13.5
YBX3P16989 CLUH-203ENST00000571539 237 ntTSL 27.2□□□□□ -1.269e-9■■□□□ 13.5
YBX3P16989 HAX1-204ENST00000457918 914 ntTSL 1 (best) BASIC16.81■□□□□ 0.283e-9■■□□□ 13.5
YBX3P16989 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC29.91■■■□□ 2.381e-7■■□□□ 13.5
YBX3P16989 MRPL4-209ENST00000591054 777 ntTSL 327.78■■■□□ 2.041e-7■■□□□ 13.5
YBX3P16989 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC25.5■■□□□ 1.671e-7■■□□□ 13.5
YBX3P16989 ARRDC3-201ENST00000265138 4188 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.271e-8■■□□□ 13.5
YBX3P16989 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.422e-6■■□□□ 13.5
YBX3P16989 GNAS-236ENST00000479025 466 ntTSL 217.68■□□□□ 0.422e-23■■□□□ 13.5
YBX3P16989 RNMT-208ENST00000591922 581 ntTSL 47.34□□□□□ -1.232e-6■■□□□ 13.5
YBX3P16989 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC5.95□□□□□ -1.462e-6■■□□□ 13.5
YBX3P16989 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.522e-6■■□□□ 13.5
YBX3P16989 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC5.39□□□□□ -1.552e-6■■□□□ 13.5
YBX3P16989 SENP3-209ENST00000610454 606 ntTSL 317.48■□□□□ 0.396e-8■■□□□ 13.5
YBX3P16989 SENP3-205ENST00000581010 527 nt9.6□□□□□ -0.876e-8■■□□□ 13.5
YBX3P16989 RPLP0P6-201ENST00000394878 954 ntBASIC13.78□□□□□ -0.22e-8■■□□□ 13.5
YBX3P16989 PHB2-212ENST00000545555 309 ntTSL 511.98□□□□□ -0.497e-9■■□□□ 13.5
YBX3P16989 HYOU1-203ENST00000527038 629 ntTSL 228.85■■■□□ 2.214e-8■■□□□ 13.5
YBX3P16989 HYOU1-205ENST00000529174 549 ntTSL 425.42■■□□□ 1.664e-8■■□□□ 13.5
YBX3P16989 HYOU1-213ENST00000533381 694 ntTSL 324.31■■□□□ 1.484e-8■■□□□ 13.5
YBX3P16989 HYOU1-211ENST00000532421 582 ntTSL 222.86■■□□□ 1.254e-8■■□□□ 13.5
YBX3P16989 HYOU1-222ENST00000622474 549 ntTSL 221.48■■□□□ 1.034e-8■■□□□ 13.5
YBX3P16989 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.374e-7■■□□□ 13.5
YBX3P16989 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.214e-7■■□□□ 13.5
YBX3P16989 STK40-203ENST00000373130 3628 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.134e-7■■□□□ 13.5
YBX3P16989 STK40-201ENST00000359297 4837 ntTSL 2 BASIC13.34□□□□□ -0.274e-7■■□□□ 13.5
Retrieved 100 of 29,075 protein–RNA pairs in 311.1 ms