RNA–Protein interactions for RNA: ENST00000536710.1

PRKDC-208, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 4

Gene PRKDC, Length 554 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-208ENST00000536710 AEBP2Q6ZN18 517 aaPredicted RBP22.93■■□□□ 1.26
PRKDC-208ENST00000536710 CHIC1Q5VXU3 224 aa22.91■■□□□ 1.26
PRKDC-208ENST00000536710 PHF23Q9BUL5 403 aaPredicted RBP20.2■□□□□ 0.82
PRKDC-208ENST00000536710 SENP3Q9H4L4 574 aaPredicted RBP19.4■□□□□ 0.7
PRKDC-208ENST00000536710 PLPPR3Q6T4P5 718 aa18.87■□□□□ 0.61
PRKDC-208ENST00000536710 FOXD1Q16676 465 aa17.93■□□□□ 0.46
PRKDC-208ENST00000536710 ADRA2BP18089 450 aa17.72■□□□□ 0.43
PRKDC-208ENST00000536710 PPP6R1Q9UPN7 881 aa17.67■□□□□ 0.42
PRKDC-208ENST00000536710 PIAS4Q8N2W9 510 aaPredicted RBP17.1■□□□□ 0.33
PRKDC-208ENST00000536710 KCNA4P22459 653 aa16.91■□□□□ 0.3
PRKDC-208ENST00000536710 PPP4R3CPQ6ZMV5 832 aa16.7■□□□□ 0.26
PRKDC-208ENST00000536710 NCBP3Q53F19 620 aaKnown RBP16.43■□□□□ 0.22
PRKDC-208ENST00000536710 EHMT2Q96KQ7 1210 aa16.43■□□□□ 0.22
PRKDC-208ENST00000536710 MSH5O43196 834 aa16.34■□□□□ 0.21
PRKDC-208ENST00000536710 SLC4A1APQ9BWU0 796 aaKnown RBP16.22■□□□□ 0.19
PRKDC-208ENST00000536710 SCAF1Q9H7N4 1312 aaKnown RBP16.21■□□□□ 0.19
PRKDC-208ENST00000536710 NPM3O75607 178 aaKnown RBP16.16■□□□□ 0.18
PRKDC-208ENST00000536710 CNKSR2Q8WXI2 1034 aa16.1■□□□□ 0.17
PRKDC-208ENST00000536710 MAPK8IP2Q13387 824 aaPredicted RBP15.92■□□□□ 0.14
PRKDC-208ENST00000536710 CSRNP3Q8WYN3 585 aa15.89■□□□□ 0.13
PRKDC-208ENST00000536710 RNF216Q9NWF9 866 aaPredicted RBP15.64■□□□□ 0.09
PRKDC-208ENST00000536710 DMRT2Q9Y5R5 561 aa15.55■□□□□ 0.08
PRKDC-208ENST00000536710 ZBTB22O15209 634 aa15.54■□□□□ 0.08
PRKDC-208ENST00000536710 DNAJC5BQ9UF47 199 aa15.48■□□□□ 0.07
PRKDC-208ENST00000536710 HOXD11P31277 338 aaPredicted RBP15.41■□□□□ 0.06
PRKDC-208ENST00000536710 FOXD4L1Q9NU39 408 aa15.41■□□□□ 0.06
PRKDC-208ENST00000536710 SLC4A2P04920 1241 aa15.11■□□□□ 0.01
PRKDC-208ENST00000536710 DCAF8L1A6NGE4 600 aa15□□□□□ -0.01
PRKDC-208ENST00000536710 MYCNP04198 464 aaPredicted RBP14.93□□□□□ -0.02
PRKDC-208ENST00000536710 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.8□□□□□ -0.04
PRKDC-208ENST00000536710 ATXN8OSP0DMR3 200 aa14.78□□□□□ -0.04
PRKDC-208ENST00000536710 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.57□□□□□ -0.08
PRKDC-208ENST00000536710 HNRNPUL2Q1KMD3 747 aaKnown RBP14.57□□□□□ -0.08
PRKDC-208ENST00000536710 U3KPZ7 1027 aaPredicted RBP14.55□□□□□ -0.08
PRKDC-208ENST00000536710 SAMD1Q6SPF0 538 aaPredicted RBP14.54□□□□□ -0.08
PRKDC-208ENST00000536710 ATF5Q9Y2D1 282 aaPredicted RBP14.48□□□□□ -0.09
PRKDC-208ENST00000536710 FKBP8Q14318 412 aa14.4□□□□□ -0.1
PRKDC-208ENST00000536710 APLP2Q06481 763 aa14.3□□□□□ -0.12
PRKDC-208ENST00000536710 ZNF219Q9P2Y4 722 aaPredicted RBP14.22□□□□□ -0.13
PRKDC-208ENST00000536710 TRHP20396 242 aaPredicted RBP14.05□□□□□ -0.16
PRKDC-208ENST00000536710 RNF39Q9H2S5 420 aa14.03□□□□□ -0.16
PRKDC-208ENST00000536710 AMER1Q5JTC6 1135 aaPredicted RBP14.02□□□□□ -0.17
PRKDC-208ENST00000536710 SPINK5Q9NQ38 1064 aaPredicted RBP14.02□□□□□ -0.17
PRKDC-208ENST00000536710 RTN4Q9NQC3 1192 aaKnown RBP14.01□□□□□ -0.17
PRKDC-208ENST00000536710 CAPN15O75808 1086 aa13.99□□□□□ -0.17
PRKDC-208ENST00000536710 POTEDQ86YR6 584 aa13.96□□□□□ -0.17
PRKDC-208ENST00000536710 C1QBPQ07021 282 aaKnown RBP13.91□□□□□ -0.18
PRKDC-208ENST00000536710 POLA2Q14181 598 aa13.91□□□□□ -0.18
PRKDC-208ENST00000536710 FBLN2P98095 1184 aa13.89□□□□□ -0.19
PRKDC-208ENST00000536710 MKRN4PQ13434 485 aaPredicted RBP13.87□□□□□ -0.19
PRKDC-208ENST00000536710 SPDYE4A6NLX3 237 aa13.86□□□□□ -0.19
PRKDC-208ENST00000536710 ABCB7O75027 752 aa13.77□□□□□ -0.21
PRKDC-208ENST00000536710 FBXO3Q9UK99 471 aa13.72□□□□□ -0.21
PRKDC-208ENST00000536710 ZBTB12Q9Y330 459 aaPredicted RBP13.69□□□□□ -0.22
PRKDC-208ENST00000536710 PROM2Q8N271 834 aa13.6□□□□□ -0.23
PRKDC-208ENST00000536710 DSG3P32926 999 aa13.54□□□□□ -0.24
PRKDC-208ENST00000536710 SLC24A1O60721 1099 aa13.52□□□□□ -0.25
PRKDC-208ENST00000536710 VASPP50552 380 aaPredicted RBP13.51□□□□□ -0.25
PRKDC-208ENST00000536710 ZNF692Q9BU19 519 aaPredicted RBP13.43□□□□□ -0.26
PRKDC-208ENST00000536710 OSCARQ8IYS5 282 aa13.41□□□□□ -0.26
PRKDC-208ENST00000536710 CACNB1Q02641 598 aaPredicted RBP13.37□□□□□ -0.27
PRKDC-208ENST00000536710 SPDYE2BA6NHP3 402 aa13.36□□□□□ -0.27
PRKDC-208ENST00000536710 SPDYE6P0CI01 402 aa13.36□□□□□ -0.27
PRKDC-208ENST00000536710 SPDYE2Q495Y8 402 aa13.36□□□□□ -0.27
PRKDC-208ENST00000536710 IFNLR1Q8IU57 520 aaPredicted RBP13.35□□□□□ -0.27
PRKDC-208ENST00000536710 SSUH2Q9Y2M2 353 aa13.27□□□□□ -0.29
PRKDC-208ENST00000536710 PABPN1Q86U42 306 aaKnown RBP eCLIP13.26□□□□□ -0.29
PRKDC-208ENST00000536710 KLHL34Q8N239 644 aa13.24□□□□□ -0.29
PRKDC-208ENST00000536710 STAG3Q9UJ98 1225 aa13.23□□□□□ -0.29
PRKDC-208ENST00000536710 DCAF8L2P0C7V8 631 aa13.19□□□□□ -0.3
PRKDC-208ENST00000536710 PLCD3Q8N3E9 789 aa13.19□□□□□ -0.3
PRKDC-208ENST00000536710 MIER1Q8N108 512 aa13.13□□□□□ -0.31
PRKDC-208ENST00000536710 SPOCK2Q92563 424 aa13.13□□□□□ -0.31
PRKDC-208ENST00000536710 PKD2Q13563 968 aa13.09□□□□□ -0.31
PRKDC-208ENST00000536710 PLEKHG5O94827 1062 aa13.04□□□□□ -0.32
PRKDC-208ENST00000536710 ECM2O94769 699 aaPredicted RBP12.99□□□□□ -0.33
PRKDC-208ENST00000536710 ZBTB47Q9UFB7 747 aaPredicted RBP12.96□□□□□ -0.33
PRKDC-208ENST00000536710 PLCB2Q00722 1185 aa12.95□□□□□ -0.34
PRKDC-208ENST00000536710 RBM42Q9BTD8 480 aaKnown RBP12.92□□□□□ -0.34
PRKDC-208ENST00000536710 CIZ1Q9ULV3 898 aaPredicted RBP12.9□□□□□ -0.34
PRKDC-208ENST00000536710 SPDYE1Q8NFV5 336 aaPredicted RBP12.86□□□□□ -0.35
PRKDC-208ENST00000536710 AKT1S1Q96B36 256 aa12.86□□□□□ -0.35
PRKDC-208ENST00000536710 HAP1P54257 671 aaPredicted RBP12.84□□□□□ -0.35
PRKDC-208ENST00000536710 CLEC11AQ9Y240 323 aa12.84□□□□□ -0.35
PRKDC-208ENST00000536710 RGL2O15211 777 aa12.81□□□□□ -0.36
PRKDC-208ENST00000536710 PRR29P0C7W0 189 aa12.77□□□□□ -0.37
PRKDC-208ENST00000536710 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.77□□□□□ -0.37
PRKDC-208ENST00000536710 REM2Q8IYK8 340 aaPredicted RBP12.74□□□□□ -0.37
PRKDC-208ENST00000536710 BBXQ8WY36 941 aaPredicted RBP12.74□□□□□ -0.37
PRKDC-208ENST00000536710 NPM1P06748 294 aaKnown RBP eCLIP12.72□□□□□ -0.37
PRKDC-208ENST00000536710 TRIM41Q8WV44 630 aa12.71□□□□□ -0.37
PRKDC-208ENST00000536710 GSE1Q14687 1217 aa12.7□□□□□ -0.38
PRKDC-208ENST00000536710 DCAF8Q5TAQ9 597 aa12.67□□□□□ -0.38
PRKDC-208ENST00000536710 PAXIP1Q6ZW49 1069 aaPredicted RBP12.67□□□□□ -0.38
PRKDC-208ENST00000536710 CFAP44Q96MT7 982 aa12.67□□□□□ -0.38
PRKDC-208ENST00000536710 CHGAP10645 457 aaKnown RBP12.66□□□□□ -0.38
PRKDC-208ENST00000536710 CREBZFQ9NS37 354 aa12.66□□□□□ -0.38
PRKDC-208ENST00000536710 NUBP1P53384 320 aa12.65□□□□□ -0.38
PRKDC-208ENST00000536710 FAM212AQ96EL1 285 aa12.61□□□□□ -0.39
PRKDC-208ENST00000536710 PITPNM1O00562 1244 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms