Protein–RNA interactions for Protein: P04440

HLA-DPB1, HLA class II histocompatibility antigen, DP beta 1 chain, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPB1P04440 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HLA-DPB1P04440 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC16.72■□□□□ 0.27
HLA-DPB1P04440 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
HLA-DPB1P04440 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
HLA-DPB1P04440 PXK-206ENST00000463280 2825 ntTSL 2 BASIC16.72■□□□□ 0.27
HLA-DPB1P04440 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
HLA-DPB1P04440 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HLA-DPB1P04440 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC16.72■□□□□ 0.27
HLA-DPB1P04440 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HLA-DPB1P04440 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HLA-DPB1P04440 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HLA-DPB1P04440 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC16.72■□□□□ 0.27
HLA-DPB1P04440 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC16.72■□□□□ 0.27
HLA-DPB1P04440 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
HLA-DPB1P04440 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC16.72■□□□□ 0.27
HLA-DPB1P04440 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HLA-DPB1P04440 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HLA-DPB1P04440 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
HLA-DPB1P04440 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HLA-DPB1P04440 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HLA-DPB1P04440 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
HLA-DPB1P04440 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HLA-DPB1P04440 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
HLA-DPB1P04440 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC16.72■□□□□ 0.27
HLA-DPB1P04440 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HLA-DPB1P04440 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
HLA-DPB1P04440 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HLA-DPB1P04440 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HLA-DPB1P04440 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC16.71■□□□□ 0.27
HLA-DPB1P04440 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HLA-DPB1P04440 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
HLA-DPB1P04440 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HLA-DPB1P04440 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HLA-DPB1P04440 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
HLA-DPB1P04440 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
HLA-DPB1P04440 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
HLA-DPB1P04440 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HLA-DPB1P04440 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HLA-DPB1P04440 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
HLA-DPB1P04440 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HLA-DPB1P04440 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
HLA-DPB1P04440 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HLA-DPB1P04440 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HLA-DPB1P04440 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
HLA-DPB1P04440 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HLA-DPB1P04440 TREX2-204ENST00000370212 861 ntTSL 5 BASIC16.71■□□□□ 0.27
HLA-DPB1P04440 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
HLA-DPB1P04440 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
HLA-DPB1P04440 KRT18P29-201ENST00000397031 1267 ntBASIC16.71■□□□□ 0.27
HLA-DPB1P04440 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC16.71■□□□□ 0.27
HLA-DPB1P04440 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC16.71■□□□□ 0.27
HLA-DPB1P04440 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC16.71■□□□□ 0.27
HLA-DPB1P04440 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC16.71■□□□□ 0.27
HLA-DPB1P04440 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC16.71■□□□□ 0.27
HLA-DPB1P04440 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC16.71■□□□□ 0.27
HLA-DPB1P04440 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HLA-DPB1P04440 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HLA-DPB1P04440 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HLA-DPB1P04440 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HLA-DPB1P04440 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DPB1P04440 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC16.7■□□□□ 0.26
HLA-DPB1P04440 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DPB1P04440 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DPB1P04440 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DPB1P04440 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DPB1P04440 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DPB1P04440 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DPB1P04440 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
HLA-DPB1P04440 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DPB1P04440 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
HLA-DPB1P04440 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DPB1P04440 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DPB1P04440 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DPB1P04440 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DPB1P04440 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DPB1P04440 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DPB1P04440 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC16.7■□□□□ 0.26
HLA-DPB1P04440 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DPB1P04440 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
HLA-DPB1P04440 NBPF21P-201ENST00000425093 1451 ntBASIC16.7■□□□□ 0.26
HLA-DPB1P04440 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DPB1P04440 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC16.7■□□□□ 0.26
HLA-DPB1P04440 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DPB1P04440 AC239809.2-201ENST00000415381 517 ntBASIC16.7■□□□□ 0.26
HLA-DPB1P04440 YBX1P10-201ENST00000444752 975 ntBASIC16.7■□□□□ 0.26
HLA-DPB1P04440 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC16.7■□□□□ 0.26
HLA-DPB1P04440 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC16.7■□□□□ 0.26
HLA-DPB1P04440 F2R-202ENST00000505600 442 ntTSL 2 BASIC16.7■□□□□ 0.26
HLA-DPB1P04440 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC16.7■□□□□ 0.26
HLA-DPB1P04440 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC16.7■□□□□ 0.26
HLA-DPB1P04440 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DPB1P04440 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DPB1P04440 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
HLA-DPB1P04440 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DPB1P04440 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DPB1P04440 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DPB1P04440 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DPB1P04440 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC16.7■□□□□ 0.26
HLA-DPB1P04440 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HLA-DPB1P04440 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms