Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 AC009078.2-202ENST00000463353 338 ntBASIC21.67■■□□□ 1.06
COL2A1P02458 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC21.67■■□□□ 1.06
COL2A1P02458 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC21.67■■□□□ 1.06
COL2A1P02458 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC21.67■■□□□ 1.06
COL2A1P02458 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC21.67■■□□□ 1.06
COL2A1P02458 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC21.67■■□□□ 1.06
COL2A1P02458 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
COL2A1P02458 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
COL2A1P02458 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
COL2A1P02458 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL2A1P02458 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL2A1P02458 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL2A1P02458 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC21.66■■□□□ 1.06
COL2A1P02458 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COL2A1P02458 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL2A1P02458 KRT16P4-201ENST00000453883 522 ntBASIC21.66■■□□□ 1.06
COL2A1P02458 SAPCD2P3-201ENST00000455031 850 ntBASIC21.66■■□□□ 1.06
COL2A1P02458 AP002469.2-201ENST00000531724 424 ntBASIC21.66■■□□□ 1.06
COL2A1P02458 SLC25A6P4-201ENST00000586535 553 ntBASIC21.66■■□□□ 1.06
COL2A1P02458 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
COL2A1P02458 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
COL2A1P02458 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COL2A1P02458 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
COL2A1P02458 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COL2A1P02458 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC21.66■■□□□ 1.06
COL2A1P02458 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COL2A1P02458 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
COL2A1P02458 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
COL2A1P02458 MYLKP1-201ENST00000509077 1580 ntBASIC21.66■■□□□ 1.06
COL2A1P02458 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COL2A1P02458 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC21.66■■□□□ 1.06
COL2A1P02458 SDHAP2-201ENST00000455183 2001 ntBASIC21.66■■□□□ 1.06
COL2A1P02458 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
COL2A1P02458 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC21.66■■□□□ 1.06
COL2A1P02458 AC112777.1-201ENST00000540175 1423 ntBASIC21.66■■□□□ 1.06
COL2A1P02458 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC21.66■■□□□ 1.06
COL2A1P02458 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL2A1P02458 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
COL2A1P02458 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC21.65■■□□□ 1.06
COL2A1P02458 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC21.65■■□□□ 1.06
COL2A1P02458 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL2A1P02458 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL2A1P02458 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC21.65■■□□□ 1.06
COL2A1P02458 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
COL2A1P02458 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
COL2A1P02458 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC21.65■■□□□ 1.06
COL2A1P02458 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL2A1P02458 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC21.65■■□□□ 1.06
COL2A1P02458 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL2A1P02458 NARF-204ENST00000390006 1766 ntTSL 2 BASIC21.65■■□□□ 1.06
COL2A1P02458 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
COL2A1P02458 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC21.64■■□□□ 1.06
COL2A1P02458 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC21.64■■□□□ 1.06
COL2A1P02458 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.06
COL2A1P02458 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.06
COL2A1P02458 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC21.64■■□□□ 1.06
COL2A1P02458 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC21.64■■□□□ 1.06
COL2A1P02458 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC21.64■■□□□ 1.06
COL2A1P02458 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC21.64■■□□□ 1.06
COL2A1P02458 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
COL2A1P02458 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
COL2A1P02458 TPM1-218ENST00000559281 851 ntTSL 5 BASIC21.64■■□□□ 1.06
COL2A1P02458 LINC01711-201ENST00000598340 967 ntBASIC21.64■■□□□ 1.06
COL2A1P02458 AL121912.1-201ENST00000603683 238 ntBASIC21.64■■□□□ 1.06
COL2A1P02458 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC21.64■■□□□ 1.06
COL2A1P02458 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
COL2A1P02458 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC21.64■■□□□ 1.06
COL2A1P02458 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC21.64■■□□□ 1.06
COL2A1P02458 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC21.64■■□□□ 1.06
COL2A1P02458 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.06
COL2A1P02458 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
COL2A1P02458 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.06
COL2A1P02458 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC21.64■■□□□ 1.05
COL2A1P02458 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
COL2A1P02458 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC21.64■■□□□ 1.05
COL2A1P02458 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL2A1P02458 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL2A1P02458 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL2A1P02458 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC21.64■■□□□ 1.05
COL2A1P02458 EMD-201ENST00000369835 966 ntTSL 3 BASIC21.64■■□□□ 1.05
COL2A1P02458 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL2A1P02458 NUS1P2-201ENST00000417358 873 ntBASIC21.64■■□□□ 1.05
COL2A1P02458 AP000347.1-202ENST00000435868 847 ntBASIC21.64■■□□□ 1.05
COL2A1P02458 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC21.64■■□□□ 1.05
COL2A1P02458 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC21.64■■□□□ 1.05
COL2A1P02458 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC21.64■■□□□ 1.05
COL2A1P02458 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC21.64■■□□□ 1.05
COL2A1P02458 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC21.64■■□□□ 1.05
COL2A1P02458 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC21.64■■□□□ 1.05
COL2A1P02458 AC011840.4-201ENST00000578471 627 ntBASIC21.64■■□□□ 1.05
COL2A1P02458 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL2A1P02458 AC005336.2-201ENST00000593183 939 ntBASIC21.64■■□□□ 1.05
COL2A1P02458 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC21.64■■□□□ 1.05
COL2A1P02458 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
COL2A1P02458 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC21.64■■□□□ 1.05
COL2A1P02458 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL2A1P02458 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL2A1P02458 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL2A1P02458 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
COL2A1P02458 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC21.63■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms