Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
VPS4BO75351 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
VPS4BO75351 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC18.24■□□□□ 0.51
VPS4BO75351 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS4BO75351 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS4BO75351 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS4BO75351 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC18.24■□□□□ 0.51
VPS4BO75351 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC18.24■□□□□ 0.51
VPS4BO75351 RBM17P1-201ENST00000453646 1190 ntBASIC18.24■□□□□ 0.51
VPS4BO75351 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC18.24■□□□□ 0.51
VPS4BO75351 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
VPS4BO75351 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
VPS4BO75351 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC18.24■□□□□ 0.51
VPS4BO75351 NAPSB-206ENST00000562112 1266 ntBASIC18.24■□□□□ 0.51
VPS4BO75351 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC18.24■□□□□ 0.51
VPS4BO75351 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS4BO75351 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC18.24■□□□□ 0.51
VPS4BO75351 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
VPS4BO75351 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS4BO75351 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC18.24■□□□□ 0.51
VPS4BO75351 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC18.24■□□□□ 0.51
VPS4BO75351 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS4BO75351 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
VPS4BO75351 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC18.24■□□□□ 0.51
VPS4BO75351 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC18.23■□□□□ 0.51
VPS4BO75351 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS4BO75351 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC18.23■□□□□ 0.51
VPS4BO75351 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS4BO75351 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC18.23■□□□□ 0.51
VPS4BO75351 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS4BO75351 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC18.23■□□□□ 0.51
VPS4BO75351 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
VPS4BO75351 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS4BO75351 SNAI3-AS1-205ENST00000568633 2096 ntBASIC18.23■□□□□ 0.51
VPS4BO75351 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS4BO75351 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC18.23■□□□□ 0.51
VPS4BO75351 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS4BO75351 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC18.23■□□□□ 0.51
VPS4BO75351 NBPF21P-201ENST00000425093 1451 ntBASIC18.23■□□□□ 0.51
VPS4BO75351 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS4BO75351 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
VPS4BO75351 MIR1238-201ENST00000408483 83 ntBASIC18.23■□□□□ 0.51
VPS4BO75351 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC18.23■□□□□ 0.51
VPS4BO75351 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC18.23■□□□□ 0.51
VPS4BO75351 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC18.23■□□□□ 0.51
VPS4BO75351 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC18.23■□□□□ 0.51
VPS4BO75351 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC18.23■□□□□ 0.51
VPS4BO75351 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC18.23■□□□□ 0.51
VPS4BO75351 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS4BO75351 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
VPS4BO75351 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
VPS4BO75351 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
VPS4BO75351 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC18.23■□□□□ 0.51
VPS4BO75351 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
VPS4BO75351 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC18.23■□□□□ 0.51
VPS4BO75351 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS4BO75351 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS4BO75351 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
VPS4BO75351 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
VPS4BO75351 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS4BO75351 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC18.22■□□□□ 0.51
VPS4BO75351 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS4BO75351 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS4BO75351 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
VPS4BO75351 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS4BO75351 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
VPS4BO75351 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
VPS4BO75351 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC18.22■□□□□ 0.51
VPS4BO75351 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC18.22■□□□□ 0.51
VPS4BO75351 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC18.22■□□□□ 0.51
VPS4BO75351 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC18.22■□□□□ 0.51
VPS4BO75351 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS4BO75351 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC18.22■□□□□ 0.51
VPS4BO75351 MYC-208ENST00000641036 567 ntBASIC18.22■□□□□ 0.51
VPS4BO75351 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC18.22■□□□□ 0.51
VPS4BO75351 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS4BO75351 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC18.22■□□□□ 0.51
VPS4BO75351 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS4BO75351 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
VPS4BO75351 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS4BO75351 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC18.22■□□□□ 0.51
VPS4BO75351 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS4BO75351 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC18.22■□□□□ 0.51
VPS4BO75351 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS4BO75351 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC18.22■□□□□ 0.51
VPS4BO75351 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC18.22■□□□□ 0.51
VPS4BO75351 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
VPS4BO75351 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
VPS4BO75351 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
VPS4BO75351 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS4BO75351 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC18.21■□□□□ 0.51
VPS4BO75351 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS4BO75351 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
VPS4BO75351 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS4BO75351 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS4BO75351 KATNBL1P6-202ENST00000562413 1466 ntBASIC18.21■□□□□ 0.51
VPS4BO75351 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC18.21■□□□□ 0.51
VPS4BO75351 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS4BO75351 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
VPS4BO75351 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms