Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM13O60858 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM13O60858 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
TRIM13O60858 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM13O60858 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM13O60858 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM13O60858 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM13O60858 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM13O60858 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM13O60858 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM13O60858 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC18.32■□□□□ 0.52
TRIM13O60858 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM13O60858 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC18.32■□□□□ 0.52
TRIM13O60858 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC18.32■□□□□ 0.52
TRIM13O60858 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC18.32■□□□□ 0.52
TRIM13O60858 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC18.32■□□□□ 0.52
TRIM13O60858 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC18.32■□□□□ 0.52
TRIM13O60858 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM13O60858 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC18.32■□□□□ 0.52
TRIM13O60858 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM13O60858 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM13O60858 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM13O60858 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC18.32■□□□□ 0.52
TRIM13O60858 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM13O60858 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM13O60858 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM13O60858 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC18.31■□□□□ 0.52
TRIM13O60858 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC18.31■□□□□ 0.52
TRIM13O60858 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM13O60858 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM13O60858 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC18.31■□□□□ 0.52
TRIM13O60858 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM13O60858 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM13O60858 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM13O60858 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC18.31■□□□□ 0.52
TRIM13O60858 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM13O60858 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM13O60858 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM13O60858 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM13O60858 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM13O60858 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
TRIM13O60858 KRASP1-201ENST00000407852 552 ntBASIC18.31■□□□□ 0.52
TRIM13O60858 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM13O60858 AL023875.1-201ENST00000640777 796 ntBASIC18.31■□□□□ 0.52
TRIM13O60858 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM13O60858 AC008556.1-201ENST00000610908 2040 ntBASIC18.31■□□□□ 0.52
TRIM13O60858 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM13O60858 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM13O60858 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC18.31■□□□□ 0.52
TRIM13O60858 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM13O60858 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC18.31■□□□□ 0.52
TRIM13O60858 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC18.31■□□□□ 0.52
TRIM13O60858 FLYWCH1P1-201ENST00000460917 1874 ntBASIC18.31■□□□□ 0.52
TRIM13O60858 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM13O60858 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC18.3■□□□□ 0.52
TRIM13O60858 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM13O60858 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM13O60858 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC18.3■□□□□ 0.52
TRIM13O60858 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM13O60858 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM13O60858 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
TRIM13O60858 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM13O60858 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM13O60858 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM13O60858 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM13O60858 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
TRIM13O60858 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM13O60858 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM13O60858 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM13O60858 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM13O60858 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC18.3■□□□□ 0.52
TRIM13O60858 AC004980.1-204ENST00000429707 299 ntBASIC18.3■□□□□ 0.52
TRIM13O60858 SLC25A6P5-201ENST00000435663 894 ntBASIC18.3■□□□□ 0.52
TRIM13O60858 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
TRIM13O60858 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
TRIM13O60858 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC18.3■□□□□ 0.52
TRIM13O60858 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC18.3■□□□□ 0.52
TRIM13O60858 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM13O60858 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
TRIM13O60858 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM13O60858 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
TRIM13O60858 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
TRIM13O60858 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC18.3■□□□□ 0.52
TRIM13O60858 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
TRIM13O60858 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM13O60858 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM13O60858 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC18.3■□□□□ 0.52
TRIM13O60858 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM13O60858 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
TRIM13O60858 AC138028.4-201ENST00000564984 1845 ntBASIC18.3■□□□□ 0.52
TRIM13O60858 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
TRIM13O60858 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC18.3■□□□□ 0.52
TRIM13O60858 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
TRIM13O60858 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
TRIM13O60858 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC18.3■□□□□ 0.52
TRIM13O60858 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC18.3■□□□□ 0.52
TRIM13O60858 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
TRIM13O60858 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
TRIM13O60858 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM13O60858 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms