Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CBX4O00257 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC18.99■□□□□ 0.63
CBX4O00257 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CBX4O00257 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC18.99■□□□□ 0.63
CBX4O00257 METTL23-204ENST00000586752 904 ntTSL 2 BASIC18.99■□□□□ 0.63
CBX4O00257 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC18.99■□□□□ 0.63
CBX4O00257 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC18.99■□□□□ 0.63
CBX4O00257 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC18.99■□□□□ 0.63
CBX4O00257 COBL-210ENST00000632460 1941 ntTSL 5 BASIC18.99■□□□□ 0.63
CBX4O00257 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CBX4O00257 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
CBX4O00257 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CBX4O00257 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CBX4O00257 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
CBX4O00257 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC18.99■□□□□ 0.63
CBX4O00257 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC18.99■□□□□ 0.63
CBX4O00257 AC087289.5-201ENST00000586076 3175 ntBASIC18.99■□□□□ 0.63
CBX4O00257 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CBX4O00257 HOXB1-202ENST00000577092 1414 ntBASIC18.99■□□□□ 0.63
CBX4O00257 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CBX4O00257 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CBX4O00257 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CBX4O00257 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC18.98■□□□□ 0.63
CBX4O00257 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CBX4O00257 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CBX4O00257 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CBX4O00257 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CBX4O00257 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CBX4O00257 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC18.98■□□□□ 0.63
CBX4O00257 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC18.98■□□□□ 0.63
CBX4O00257 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CBX4O00257 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CBX4O00257 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CBX4O00257 FAM8A6P-201ENST00000407496 1135 ntBASIC18.98■□□□□ 0.63
CBX4O00257 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CBX4O00257 SEC1P-202ENST00000473944 940 ntBASIC18.98■□□□□ 0.63
CBX4O00257 SNX5-210ENST00000481323 562 ntTSL 3 BASIC18.98■□□□□ 0.63
CBX4O00257 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
CBX4O00257 CD81-212ENST00000526072 1172 ntTSL 5 BASIC18.98■□□□□ 0.63
CBX4O00257 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC18.98■□□□□ 0.63
CBX4O00257 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC18.98■□□□□ 0.63
CBX4O00257 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CBX4O00257 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CBX4O00257 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CBX4O00257 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC18.98■□□□□ 0.63
CBX4O00257 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC18.98■□□□□ 0.63
CBX4O00257 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CBX4O00257 KRT8P7-201ENST00000533003 1432 ntBASIC18.98■□□□□ 0.63
CBX4O00257 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CBX4O00257 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CBX4O00257 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC18.97■□□□□ 0.63
CBX4O00257 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CBX4O00257 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CBX4O00257 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CBX4O00257 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CBX4O00257 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CBX4O00257 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC18.97■□□□□ 0.63
CBX4O00257 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC18.97■□□□□ 0.63
CBX4O00257 WDR88-203ENST00000592765 651 ntTSL 5 BASIC18.97■□□□□ 0.63
CBX4O00257 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
CBX4O00257 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC18.97■□□□□ 0.63
CBX4O00257 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CBX4O00257 AC018445.3-201ENST00000624177 1945 ntBASIC18.97■□□□□ 0.63
CBX4O00257 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CBX4O00257 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
CBX4O00257 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CBX4O00257 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
CBX4O00257 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CBX4O00257 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CBX4O00257 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
CBX4O00257 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC18.97■□□□□ 0.63
CBX4O00257 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
CBX4O00257 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC18.96■□□□□ 0.63
CBX4O00257 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
CBX4O00257 AC098818.2-201ENST00000564925 2320 ntBASIC18.96■□□□□ 0.63
CBX4O00257 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CBX4O00257 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
CBX4O00257 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CBX4O00257 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CBX4O00257 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC18.96■□□□□ 0.63
CBX4O00257 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC18.96■□□□□ 0.63
CBX4O00257 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC18.96■□□□□ 0.63
CBX4O00257 AC034232.1-201ENST00000506026 1064 ntBASIC18.96■□□□□ 0.63
CBX4O00257 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CBX4O00257 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
CBX4O00257 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC18.96■□□□□ 0.63
CBX4O00257 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC18.96■□□□□ 0.63
CBX4O00257 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
CBX4O00257 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
CBX4O00257 MYC-208ENST00000641036 567 ntBASIC18.96■□□□□ 0.63
CBX4O00257 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CBX4O00257 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
CBX4O00257 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC18.96■□□□□ 0.63
CBX4O00257 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
CBX4O00257 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CBX4O00257 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC18.96■□□□□ 0.63
CBX4O00257 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC18.96■□□□□ 0.63
CBX4O00257 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
CBX4O00257 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
CBX4O00257 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms