Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC16.82■□□□□ 0.28
HIF3AQ9Y2N7 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HIF3AQ9Y2N7 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC16.82■□□□□ 0.28
HIF3AQ9Y2N7 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
HIF3AQ9Y2N7 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HIF3AQ9Y2N7 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HIF3AQ9Y2N7 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC16.82■□□□□ 0.28
HIF3AQ9Y2N7 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HIF3AQ9Y2N7 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HIF3AQ9Y2N7 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
HIF3AQ9Y2N7 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HIF3AQ9Y2N7 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
HIF3AQ9Y2N7 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HIF3AQ9Y2N7 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
HIF3AQ9Y2N7 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HIF3AQ9Y2N7 PEX7-202ENST00000367756 680 ntTSL 3 BASIC16.82■□□□□ 0.28
HIF3AQ9Y2N7 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HIF3AQ9Y2N7 GCSHP5-201ENST00000443090 522 ntBASIC16.82■□□□□ 0.28
HIF3AQ9Y2N7 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC16.82■□□□□ 0.28
HIF3AQ9Y2N7 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HIF3AQ9Y2N7 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
HIF3AQ9Y2N7 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC16.82■□□□□ 0.28
HIF3AQ9Y2N7 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC16.82■□□□□ 0.28
HIF3AQ9Y2N7 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HIF3AQ9Y2N7 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HIF3AQ9Y2N7 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC16.82■□□□□ 0.28
HIF3AQ9Y2N7 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
HIF3AQ9Y2N7 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HIF3AQ9Y2N7 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC16.82■□□□□ 0.28
HIF3AQ9Y2N7 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC16.82■□□□□ 0.28
HIF3AQ9Y2N7 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HIF3AQ9Y2N7 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HIF3AQ9Y2N7 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC16.81■□□□□ 0.28
HIF3AQ9Y2N7 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
HIF3AQ9Y2N7 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HIF3AQ9Y2N7 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC16.81■□□□□ 0.28
HIF3AQ9Y2N7 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HIF3AQ9Y2N7 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HIF3AQ9Y2N7 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
HIF3AQ9Y2N7 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC16.81■□□□□ 0.28
HIF3AQ9Y2N7 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC16.81■□□□□ 0.28
HIF3AQ9Y2N7 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HIF3AQ9Y2N7 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC16.81■□□□□ 0.28
HIF3AQ9Y2N7 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
HIF3AQ9Y2N7 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HIF3AQ9Y2N7 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC16.81■□□□□ 0.28
HIF3AQ9Y2N7 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HIF3AQ9Y2N7 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC16.81■□□□□ 0.28
HIF3AQ9Y2N7 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
HIF3AQ9Y2N7 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HIF3AQ9Y2N7 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
HIF3AQ9Y2N7 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HIF3AQ9Y2N7 RPS2P55-201ENST00000397318 883 ntBASIC16.81■□□□□ 0.28
HIF3AQ9Y2N7 AC012618.2-201ENST00000428058 849 ntBASIC16.81■□□□□ 0.28
HIF3AQ9Y2N7 AC107956.1-201ENST00000494359 873 ntBASIC16.81■□□□□ 0.28
HIF3AQ9Y2N7 AP001412.1-201ENST00000608405 714 ntBASIC16.81■□□□□ 0.28
HIF3AQ9Y2N7 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HIF3AQ9Y2N7 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HIF3AQ9Y2N7 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
HIF3AQ9Y2N7 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
HIF3AQ9Y2N7 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HIF3AQ9Y2N7 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
HIF3AQ9Y2N7 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
HIF3AQ9Y2N7 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HIF3AQ9Y2N7 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HIF3AQ9Y2N7 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC16.81■□□□□ 0.28
HIF3AQ9Y2N7 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
HIF3AQ9Y2N7 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC16.8■□□□□ 0.28
HIF3AQ9Y2N7 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC16.8■□□□□ 0.28
HIF3AQ9Y2N7 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
HIF3AQ9Y2N7 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC16.8■□□□□ 0.28
HIF3AQ9Y2N7 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HIF3AQ9Y2N7 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
HIF3AQ9Y2N7 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
HIF3AQ9Y2N7 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC16.8■□□□□ 0.28
HIF3AQ9Y2N7 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
HIF3AQ9Y2N7 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
HIF3AQ9Y2N7 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC16.8■□□□□ 0.28
HIF3AQ9Y2N7 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC16.8■□□□□ 0.28
HIF3AQ9Y2N7 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HIF3AQ9Y2N7 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC16.8■□□□□ 0.28
HIF3AQ9Y2N7 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HIF3AQ9Y2N7 AC233702.5-201ENST00000584107 538 ntBASIC16.8■□□□□ 0.28
HIF3AQ9Y2N7 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
HIF3AQ9Y2N7 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC16.8■□□□□ 0.28
HIF3AQ9Y2N7 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC16.8■□□□□ 0.28
HIF3AQ9Y2N7 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
HIF3AQ9Y2N7 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC16.8■□□□□ 0.28
HIF3AQ9Y2N7 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
HIF3AQ9Y2N7 AC007613.1-201ENST00000572811 2597 ntBASIC16.8■□□□□ 0.28
HIF3AQ9Y2N7 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC16.8■□□□□ 0.28
HIF3AQ9Y2N7 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
HIF3AQ9Y2N7 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
HIF3AQ9Y2N7 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HIF3AQ9Y2N7 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
HIF3AQ9Y2N7 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
HIF3AQ9Y2N7 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC16.79■□□□□ 0.28
HIF3AQ9Y2N7 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
HIF3AQ9Y2N7 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
HIF3AQ9Y2N7 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms