Protein–RNA interactions for Protein: Q9H211

CDT1, DNA replication factor Cdt1, humanhuman

Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDT1Q9H211 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
CDT1Q9H211 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
CDT1Q9H211 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CDT1Q9H211 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC20.14■□□□□ 0.81
CDT1Q9H211 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CDT1Q9H211 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
CDT1Q9H211 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CDT1Q9H211 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC20.14■□□□□ 0.81
CDT1Q9H211 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CDT1Q9H211 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC20.14■□□□□ 0.81
CDT1Q9H211 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CDT1Q9H211 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CDT1Q9H211 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CDT1Q9H211 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC20.14■□□□□ 0.81
CDT1Q9H211 AC091076.1-201ENST00000610741 619 ntBASIC20.14■□□□□ 0.81
CDT1Q9H211 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
CDT1Q9H211 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CDT1Q9H211 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
CDT1Q9H211 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
CDT1Q9H211 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CDT1Q9H211 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC20.13■□□□□ 0.81
CDT1Q9H211 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CDT1Q9H211 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC20.13■□□□□ 0.81
CDT1Q9H211 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CDT1Q9H211 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
CDT1Q9H211 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC20.13■□□□□ 0.81
CDT1Q9H211 AP000974.1-201ENST00000623909 2387 ntBASIC20.13■□□□□ 0.81
CDT1Q9H211 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CDT1Q9H211 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
CDT1Q9H211 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CDT1Q9H211 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CDT1Q9H211 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CDT1Q9H211 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CDT1Q9H211 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CDT1Q9H211 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC20.13■□□□□ 0.81
CDT1Q9H211 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC20.13■□□□□ 0.81
CDT1Q9H211 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC20.13■□□□□ 0.81
CDT1Q9H211 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
CDT1Q9H211 AC116407.4-201ENST00000623319 1061 ntBASIC20.13■□□□□ 0.81
CDT1Q9H211 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CDT1Q9H211 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CDT1Q9H211 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CDT1Q9H211 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CDT1Q9H211 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CDT1Q9H211 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
CDT1Q9H211 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
CDT1Q9H211 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC20.13■□□□□ 0.81
CDT1Q9H211 ANO7L1-203ENST00000602586 1720 ntBASIC20.13■□□□□ 0.81
CDT1Q9H211 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CDT1Q9H211 IER3-202ENST00000376377 1350 ntBASIC20.12■□□□□ 0.81
CDT1Q9H211 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC20.12■□□□□ 0.81
CDT1Q9H211 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CDT1Q9H211 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CDT1Q9H211 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC20.12■□□□□ 0.81
CDT1Q9H211 COPS8-203ENST00000409334 794 ntTSL 5 BASIC20.12■□□□□ 0.81
CDT1Q9H211 PVRIG2P-201ENST00000435460 978 ntBASIC20.12■□□□□ 0.81
CDT1Q9H211 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC20.12■□□□□ 0.81
CDT1Q9H211 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC20.12■□□□□ 0.81
CDT1Q9H211 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
CDT1Q9H211 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC20.12■□□□□ 0.81
CDT1Q9H211 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CDT1Q9H211 AL163051.1-201ENST00000569214 1512 ntBASIC20.12■□□□□ 0.81
CDT1Q9H211 PBK-203ENST00000522944 1499 ntTSL 2 BASIC20.11■□□□□ 0.81
CDT1Q9H211 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CDT1Q9H211 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
CDT1Q9H211 AL031598.1-201ENST00000561511 1773 ntBASIC20.11■□□□□ 0.81
CDT1Q9H211 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CDT1Q9H211 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CDT1Q9H211 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CDT1Q9H211 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC20.11■□□□□ 0.81
CDT1Q9H211 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CDT1Q9H211 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
CDT1Q9H211 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CDT1Q9H211 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CDT1Q9H211 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CDT1Q9H211 FXN-203ENST00000396366 922 ntTSL 2 BASIC20.11■□□□□ 0.81
CDT1Q9H211 AL645929.1-201ENST00000420084 975 ntBASIC20.11■□□□□ 0.81
CDT1Q9H211 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CDT1Q9H211 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC20.11■□□□□ 0.81
CDT1Q9H211 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC20.11■□□□□ 0.81
CDT1Q9H211 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC20.11■□□□□ 0.81
CDT1Q9H211 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC20.11■□□□□ 0.81
CDT1Q9H211 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
CDT1Q9H211 CROCCP3-202ENST00000420820 1947 ntBASIC20.11■□□□□ 0.81
CDT1Q9H211 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CDT1Q9H211 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC20.11■□□□□ 0.81
CDT1Q9H211 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
CDT1Q9H211 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
CDT1Q9H211 AC112777.1-201ENST00000540175 1423 ntBASIC20.1■□□□□ 0.81
CDT1Q9H211 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
CDT1Q9H211 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC20.1■□□□□ 0.81
CDT1Q9H211 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
CDT1Q9H211 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CDT1Q9H211 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC20.1■□□□□ 0.81
CDT1Q9H211 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CDT1Q9H211 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CDT1Q9H211 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC20.1■□□□□ 0.81
CDT1Q9H211 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
CDT1Q9H211 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
CDT1Q9H211 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC20.09■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms