Protein–RNA interactions for Protein: Q9H0I3

CCDC113, Coiled-coil domain-containing protein 113, humanhuman

Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC113Q9H0I3 AL441883.1-201ENST00000566170 1045 ntBASIC20.61■□□□□ 0.89
CCDC113Q9H0I3 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC113Q9H0I3 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC113Q9H0I3 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC20.61■□□□□ 0.89
CCDC113Q9H0I3 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC20.61■□□□□ 0.89
CCDC113Q9H0I3 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC113Q9H0I3 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC113Q9H0I3 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC113Q9H0I3 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC20.61■□□□□ 0.89
CCDC113Q9H0I3 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC20.61■□□□□ 0.89
CCDC113Q9H0I3 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CCDC113Q9H0I3 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
CCDC113Q9H0I3 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC20.61■□□□□ 0.89
CCDC113Q9H0I3 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC20.61■□□□□ 0.89
CCDC113Q9H0I3 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC113Q9H0I3 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC113Q9H0I3 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC113Q9H0I3 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC113Q9H0I3 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC20.6■□□□□ 0.89
CCDC113Q9H0I3 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC20.6■□□□□ 0.89
CCDC113Q9H0I3 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC113Q9H0I3 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC113Q9H0I3 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC113Q9H0I3 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
CCDC113Q9H0I3 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC113Q9H0I3 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC113Q9H0I3 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC113Q9H0I3 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC113Q9H0I3 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC113Q9H0I3 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC20.6■□□□□ 0.89
CCDC113Q9H0I3 RNF152P1-201ENST00000397754 604 ntBASIC20.6■□□□□ 0.89
CCDC113Q9H0I3 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC113Q9H0I3 AC068587.9-201ENST00000641814 219 ntBASIC20.6■□□□□ 0.89
CCDC113Q9H0I3 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC113Q9H0I3 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC113Q9H0I3 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC20.6■□□□□ 0.89
CCDC113Q9H0I3 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC113Q9H0I3 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
CCDC113Q9H0I3 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC113Q9H0I3 AC004408.2-201ENST00000623613 2777 ntBASIC20.6■□□□□ 0.89
CCDC113Q9H0I3 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC113Q9H0I3 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC113Q9H0I3 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC113Q9H0I3 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC113Q9H0I3 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
CCDC113Q9H0I3 AC008556.1-201ENST00000610908 2040 ntBASIC20.6■□□□□ 0.89
CCDC113Q9H0I3 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC113Q9H0I3 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC113Q9H0I3 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC113Q9H0I3 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC20.59■□□□□ 0.89
CCDC113Q9H0I3 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC113Q9H0I3 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC113Q9H0I3 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
CCDC113Q9H0I3 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC113Q9H0I3 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC113Q9H0I3 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC113Q9H0I3 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC20.59■□□□□ 0.89
CCDC113Q9H0I3 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC20.59■□□□□ 0.89
CCDC113Q9H0I3 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC113Q9H0I3 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC113Q9H0I3 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC113Q9H0I3 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC20.59■□□□□ 0.89
CCDC113Q9H0I3 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC20.59■□□□□ 0.89
CCDC113Q9H0I3 ANKRD20A18P-201ENST00000359341 492 ntBASIC20.59■□□□□ 0.89
CCDC113Q9H0I3 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC20.59■□□□□ 0.89
CCDC113Q9H0I3 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC113Q9H0I3 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC20.59■□□□□ 0.89
CCDC113Q9H0I3 AC022616.7-201ENST00000525383 220 ntBASIC20.59■□□□□ 0.89
CCDC113Q9H0I3 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC20.59■□□□□ 0.89
CCDC113Q9H0I3 AL445228.2-201ENST00000605589 952 ntBASIC20.59■□□□□ 0.89
CCDC113Q9H0I3 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC113Q9H0I3 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
CCDC113Q9H0I3 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC113Q9H0I3 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC113Q9H0I3 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC113Q9H0I3 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC20.59■□□□□ 0.89
CCDC113Q9H0I3 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC20.59■□□□□ 0.89
CCDC113Q9H0I3 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
CCDC113Q9H0I3 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC113Q9H0I3 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
CCDC113Q9H0I3 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC113Q9H0I3 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC20.58■□□□□ 0.89
CCDC113Q9H0I3 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC113Q9H0I3 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC20.58■□□□□ 0.89
CCDC113Q9H0I3 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC113Q9H0I3 GUK1-204ENST00000366721 689 ntTSL 3 BASIC20.58■□□□□ 0.89
CCDC113Q9H0I3 TSPY5P-201ENST00000426936 936 ntBASIC20.58■□□□□ 0.89
CCDC113Q9H0I3 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC20.58■□□□□ 0.89
CCDC113Q9H0I3 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC20.58■□□□□ 0.89
CCDC113Q9H0I3 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC20.58■□□□□ 0.89
CCDC113Q9H0I3 KRT18P35-201ENST00000510488 1269 ntBASIC20.58■□□□□ 0.89
CCDC113Q9H0I3 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC20.58■□□□□ 0.89
CCDC113Q9H0I3 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC20.58■□□□□ 0.89
CCDC113Q9H0I3 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC20.58■□□□□ 0.89
CCDC113Q9H0I3 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC20.58■□□□□ 0.88
CCDC113Q9H0I3 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
CCDC113Q9H0I3 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CCDC113Q9H0I3 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CCDC113Q9H0I3 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC113Q9H0I3 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms