Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC140Q96MF4 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC140Q96MF4 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC140Q96MF4 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC14.4□□□□□ -0.1
CCDC140Q96MF4 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC140Q96MF4 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC14.4□□□□□ -0.1
CCDC140Q96MF4 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC140Q96MF4 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CCDC140Q96MF4 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
CCDC140Q96MF4 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC140Q96MF4 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC140Q96MF4 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC140Q96MF4 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC140Q96MF4 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC14.39□□□□□ -0.11
CCDC140Q96MF4 MYLKP1-201ENST00000509077 1580 ntBASIC14.39□□□□□ -0.11
CCDC140Q96MF4 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC140Q96MF4 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC14.39□□□□□ -0.11
CCDC140Q96MF4 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC140Q96MF4 NEFHP1-201ENST00000412845 2629 ntBASIC14.39□□□□□ -0.11
CCDC140Q96MF4 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC140Q96MF4 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC140Q96MF4 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC14.39□□□□□ -0.11
CCDC140Q96MF4 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC140Q96MF4 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC140Q96MF4 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC140Q96MF4 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC140Q96MF4 HMGA1P5-201ENST00000412453 271 ntBASIC14.39□□□□□ -0.11
CCDC140Q96MF4 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC14.39□□□□□ -0.11
CCDC140Q96MF4 TMA16-209ENST00000513272 803 ntTSL 2 BASIC14.39□□□□□ -0.11
CCDC140Q96MF4 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
CCDC140Q96MF4 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC14.39□□□□□ -0.11
CCDC140Q96MF4 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC14.39□□□□□ -0.11
CCDC140Q96MF4 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC14.39□□□□□ -0.11
CCDC140Q96MF4 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC140Q96MF4 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC14.39□□□□□ -0.11
CCDC140Q96MF4 AC145285.6-201ENST00000604632 637 ntBASIC14.39□□□□□ -0.11
CCDC140Q96MF4 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC14.39□□□□□ -0.11
CCDC140Q96MF4 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC140Q96MF4 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC140Q96MF4 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC140Q96MF4 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC140Q96MF4 KRT8P50-201ENST00000562022 1438 ntBASIC14.39□□□□□ -0.11
CCDC140Q96MF4 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC140Q96MF4 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC14.39□□□□□ -0.11
CCDC140Q96MF4 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC140Q96MF4 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC14.39□□□□□ -0.11
CCDC140Q96MF4 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
CCDC140Q96MF4 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC140Q96MF4 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC14.39□□□□□ -0.11
CCDC140Q96MF4 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
CCDC140Q96MF4 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC140Q96MF4 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC140Q96MF4 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC140Q96MF4 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
CCDC140Q96MF4 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC140Q96MF4 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC140Q96MF4 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC14.38□□□□□ -0.11
CCDC140Q96MF4 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC140Q96MF4 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC14.38□□□□□ -0.11
CCDC140Q96MF4 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC140Q96MF4 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC14.38□□□□□ -0.11
CCDC140Q96MF4 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC140Q96MF4 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC140Q96MF4 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC140Q96MF4 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC14.38□□□□□ -0.11
CCDC140Q96MF4 AP000593.1-201ENST00000393668 712 ntBASIC14.38□□□□□ -0.11
CCDC140Q96MF4 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC140Q96MF4 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC140Q96MF4 RPS20-210ENST00000523936 899 ntTSL 2 BASIC14.38□□□□□ -0.11
CCDC140Q96MF4 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC140Q96MF4 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC14.38□□□□□ -0.11
CCDC140Q96MF4 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC140Q96MF4 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC140Q96MF4 AC073912.3-201ENST00000624414 853 ntBASIC14.38□□□□□ -0.11
CCDC140Q96MF4 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC140Q96MF4 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC14.38□□□□□ -0.11
CCDC140Q96MF4 CLN6-221ENST00000637494 765 ntTSL 5 BASIC14.38□□□□□ -0.11
CCDC140Q96MF4 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC140Q96MF4 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC140Q96MF4 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC14.38□□□□□ -0.11
CCDC140Q96MF4 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC140Q96MF4 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC140Q96MF4 HOXB1-202ENST00000577092 1414 ntBASIC14.38□□□□□ -0.11
CCDC140Q96MF4 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC14.38□□□□□ -0.11
CCDC140Q96MF4 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
CCDC140Q96MF4 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC140Q96MF4 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC140Q96MF4 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC14.38□□□□□ -0.11
CCDC140Q96MF4 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
CCDC140Q96MF4 KRT18P22-201ENST00000402024 1347 ntBASIC14.38□□□□□ -0.11
CCDC140Q96MF4 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CCDC140Q96MF4 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC14.37□□□□□ -0.11
CCDC140Q96MF4 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC14.37□□□□□ -0.11
CCDC140Q96MF4 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC14.37□□□□□ -0.11
CCDC140Q96MF4 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC140Q96MF4 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC14.37□□□□□ -0.11
CCDC140Q96MF4 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
CCDC140Q96MF4 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC14.37□□□□□ -0.11
CCDC140Q96MF4 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CCDC140Q96MF4 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms