Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC21.33■■□□□ 1
SH3RF1Q7Z6J0 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SH3RF1Q7Z6J0 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC21.32■■□□□ 1
SH3RF1Q7Z6J0 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC21.32■■□□□ 1
SH3RF1Q7Z6J0 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
SH3RF1Q7Z6J0 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SH3RF1Q7Z6J0 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC21.32■■□□□ 1
SH3RF1Q7Z6J0 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC21.32■■□□□ 1
SH3RF1Q7Z6J0 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SH3RF1Q7Z6J0 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC21.32■■□□□ 1
SH3RF1Q7Z6J0 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC21.32■■□□□ 1
SH3RF1Q7Z6J0 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
SH3RF1Q7Z6J0 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SH3RF1Q7Z6J0 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SH3RF1Q7Z6J0 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SH3RF1Q7Z6J0 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC21.32■■□□□ 1
SH3RF1Q7Z6J0 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC21.32■■□□□ 1
SH3RF1Q7Z6J0 STARP1-201ENST00000397973 869 ntBASIC21.32■■□□□ 1
SH3RF1Q7Z6J0 SPDYE15P-201ENST00000424157 909 ntBASIC21.32■■□□□ 1
SH3RF1Q7Z6J0 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC21.32■■□□□ 1
SH3RF1Q7Z6J0 SDHD-206ENST00000528182 754 ntTSL 3 BASIC21.32■■□□□ 1
SH3RF1Q7Z6J0 PRR29-207ENST00000580752 458 ntTSL 3 BASIC21.32■■□□□ 1
SH3RF1Q7Z6J0 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
SH3RF1Q7Z6J0 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC21.32■■□□□ 1
SH3RF1Q7Z6J0 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC21.32■■□□□ 1
SH3RF1Q7Z6J0 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
SH3RF1Q7Z6J0 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SH3RF1Q7Z6J0 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
SH3RF1Q7Z6J0 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
SH3RF1Q7Z6J0 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
SH3RF1Q7Z6J0 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC21.32■■□□□ 1
SH3RF1Q7Z6J0 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
SH3RF1Q7Z6J0 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC21.32■■□□□ 1
SH3RF1Q7Z6J0 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
SH3RF1Q7Z6J0 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC21.31■■□□□ 1
SH3RF1Q7Z6J0 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC21.31■■□□□ 1
SH3RF1Q7Z6J0 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SH3RF1Q7Z6J0 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC21.31■■□□□ 1
SH3RF1Q7Z6J0 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
SH3RF1Q7Z6J0 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC21.31■■□□□ 1
SH3RF1Q7Z6J0 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC21.31■■□□□ 1
SH3RF1Q7Z6J0 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SH3RF1Q7Z6J0 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC21.31■■□□□ 1
SH3RF1Q7Z6J0 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
SH3RF1Q7Z6J0 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC21.31■■□□□ 1
SH3RF1Q7Z6J0 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC21.31■■□□□ 1
SH3RF1Q7Z6J0 CKBP1-201ENST00000565489 1086 ntBASIC21.31■■□□□ 1
SH3RF1Q7Z6J0 AC009113.1-201ENST00000570267 2443 ntBASIC21.31■■□□□ 1
SH3RF1Q7Z6J0 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC21.31■■□□□ 1
SH3RF1Q7Z6J0 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC21.31■■□□□ 1
SH3RF1Q7Z6J0 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC21.31■■□□□ 1
SH3RF1Q7Z6J0 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC21.31■■□□□ 1
SH3RF1Q7Z6J0 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SH3RF1Q7Z6J0 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
SH3RF1Q7Z6J0 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SH3RF1Q7Z6J0 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC21.3■■□□□ 1
SH3RF1Q7Z6J0 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
SH3RF1Q7Z6J0 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC21.3■■□□□ 1
SH3RF1Q7Z6J0 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
SH3RF1Q7Z6J0 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SH3RF1Q7Z6J0 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC21.3■■□□□ 1
SH3RF1Q7Z6J0 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC21.3■■□□□ 1
SH3RF1Q7Z6J0 UNC93B7-201ENST00000509439 705 ntBASIC21.3■■□□□ 1
SH3RF1Q7Z6J0 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC21.3■■□□□ 1
SH3RF1Q7Z6J0 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC21.3■■□□□ 1
SH3RF1Q7Z6J0 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC21.3■■□□□ 1
SH3RF1Q7Z6J0 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SH3RF1Q7Z6J0 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
SH3RF1Q7Z6J0 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SH3RF1Q7Z6J0 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC21.3■■□□□ 1
SH3RF1Q7Z6J0 WIZP1-201ENST00000531444 2299 ntBASIC21.3■■□□□ 1
SH3RF1Q7Z6J0 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SH3RF1Q7Z6J0 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC21.29■■□□□ 1
SH3RF1Q7Z6J0 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC21.29■■□□□ 1
SH3RF1Q7Z6J0 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SH3RF1Q7Z6J0 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC21.29■■□□□ 1
SH3RF1Q7Z6J0 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC21.29■■□□□ 1
SH3RF1Q7Z6J0 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC21.29■■□□□ 1
SH3RF1Q7Z6J0 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
SH3RF1Q7Z6J0 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SH3RF1Q7Z6J0 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC21.29■■□□□ 1
SH3RF1Q7Z6J0 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SH3RF1Q7Z6J0 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SH3RF1Q7Z6J0 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SH3RF1Q7Z6J0 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC21.29■■□□□ 1
SH3RF1Q7Z6J0 MIR3652-201ENST00000579335 131 ntBASIC21.29■■□□□ 1
SH3RF1Q7Z6J0 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC21.29■■□□□ 1
SH3RF1Q7Z6J0 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SH3RF1Q7Z6J0 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SH3RF1Q7Z6J0 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SH3RF1Q7Z6J0 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SH3RF1Q7Z6J0 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
SH3RF1Q7Z6J0 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SH3RF1Q7Z6J0 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SH3RF1Q7Z6J0 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
SH3RF1Q7Z6J0 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC21.28■■□□□ 1
SH3RF1Q7Z6J0 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SH3RF1Q7Z6J0 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SH3RF1Q7Z6J0 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SH3RF1Q7Z6J0 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC21.28■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms