Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLCN3P51790 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLCN3P51790 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC20.44■□□□□ 0.86
CLCN3P51790 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC20.44■□□□□ 0.86
CLCN3P51790 AC099343.3-201ENST00000605834 2503 ntBASIC20.44■□□□□ 0.86
CLCN3P51790 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CLCN3P51790 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC20.43■□□□□ 0.86
CLCN3P51790 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC20.43■□□□□ 0.86
CLCN3P51790 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CLCN3P51790 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC20.43■□□□□ 0.86
CLCN3P51790 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CLCN3P51790 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC20.43■□□□□ 0.86
CLCN3P51790 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CLCN3P51790 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CLCN3P51790 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CLCN3P51790 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CLCN3P51790 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
CLCN3P51790 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
CLCN3P51790 IPPK-202ENST00000375522 882 ntTSL 3 BASIC20.43■□□□□ 0.86
CLCN3P51790 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CLCN3P51790 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC20.43■□□□□ 0.86
CLCN3P51790 DUSP5P1-201ENST00000441325 1139 ntBASIC20.43■□□□□ 0.86
CLCN3P51790 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC20.43■□□□□ 0.86
CLCN3P51790 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC20.43■□□□□ 0.86
CLCN3P51790 MIR3180-4-201ENST00000582223 153 ntBASIC20.43■□□□□ 0.86
CLCN3P51790 AL121672.3-201ENST00000608644 468 ntBASIC20.43■□□□□ 0.86
CLCN3P51790 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
CLCN3P51790 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC20.43■□□□□ 0.86
CLCN3P51790 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
CLCN3P51790 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CLCN3P51790 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC20.43■□□□□ 0.86
CLCN3P51790 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CLCN3P51790 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CLCN3P51790 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CLCN3P51790 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CLCN3P51790 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
CLCN3P51790 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
CLCN3P51790 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CLCN3P51790 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CLCN3P51790 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
CLCN3P51790 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CLCN3P51790 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CLCN3P51790 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC20.42■□□□□ 0.86
CLCN3P51790 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CLCN3P51790 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CLCN3P51790 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC20.42■□□□□ 0.86
CLCN3P51790 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CLCN3P51790 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CLCN3P51790 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC20.42■□□□□ 0.86
CLCN3P51790 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC20.42■□□□□ 0.86
CLCN3P51790 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
CLCN3P51790 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CLCN3P51790 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CLCN3P51790 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CLCN3P51790 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
CLCN3P51790 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
CLCN3P51790 AP002383.4-201ENST00000442518 975 ntBASIC20.42■□□□□ 0.86
CLCN3P51790 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC20.42■□□□□ 0.86
CLCN3P51790 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC20.42■□□□□ 0.86
CLCN3P51790 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC20.42■□□□□ 0.86
CLCN3P51790 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC20.42■□□□□ 0.86
CLCN3P51790 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC20.42■□□□□ 0.86
CLCN3P51790 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC20.42■□□□□ 0.86
CLCN3P51790 AC012313.10-201ENST00000623509 926 ntBASIC20.42■□□□□ 0.86
CLCN3P51790 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
CLCN3P51790 SNAI3-AS1-205ENST00000568633 2096 ntBASIC20.42■□□□□ 0.86
CLCN3P51790 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CLCN3P51790 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CLCN3P51790 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC20.42■□□□□ 0.86
CLCN3P51790 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CLCN3P51790 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLCN3P51790 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
CLCN3P51790 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
CLCN3P51790 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLCN3P51790 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.41■□□□□ 0.86
CLCN3P51790 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLCN3P51790 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLCN3P51790 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLCN3P51790 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CLCN3P51790 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CLCN3P51790 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC20.41■□□□□ 0.86
CLCN3P51790 TSPY22P-201ENST00000427496 604 ntBASIC20.41■□□□□ 0.86
CLCN3P51790 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC20.41■□□□□ 0.86
CLCN3P51790 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC20.41■□□□□ 0.86
CLCN3P51790 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLCN3P51790 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC20.41■□□□□ 0.86
CLCN3P51790 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CLCN3P51790 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC20.41■□□□□ 0.86
CLCN3P51790 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC20.41■□□□□ 0.86
CLCN3P51790 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLCN3P51790 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLCN3P51790 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLCN3P51790 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLCN3P51790 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC20.41■□□□□ 0.86
CLCN3P51790 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
CLCN3P51790 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
CLCN3P51790 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CLCN3P51790 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC20.4■□□□□ 0.86
CLCN3P51790 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC20.4■□□□□ 0.86
CLCN3P51790 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms