Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC23.39■■□□□ 1.33
CACNA1FO60840 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
CACNA1FO60840 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC23.39■■□□□ 1.33
CACNA1FO60840 AC009102.3-201ENST00000623118 1491 ntBASIC23.39■■□□□ 1.33
CACNA1FO60840 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
CACNA1FO60840 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC23.39■■□□□ 1.33
CACNA1FO60840 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
CACNA1FO60840 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC23.38■■□□□ 1.33
CACNA1FO60840 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC23.38■■□□□ 1.33
CACNA1FO60840 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC23.38■■□□□ 1.33
CACNA1FO60840 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
CACNA1FO60840 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC23.38■■□□□ 1.33
CACNA1FO60840 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC23.38■■□□□ 1.33
CACNA1FO60840 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC23.38■■□□□ 1.33
CACNA1FO60840 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
CACNA1FO60840 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
CACNA1FO60840 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC23.38■■□□□ 1.33
CACNA1FO60840 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
CACNA1FO60840 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC23.38■■□□□ 1.33
CACNA1FO60840 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC23.38■■□□□ 1.33
CACNA1FO60840 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC23.38■■□□□ 1.33
CACNA1FO60840 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC23.38■■□□□ 1.33
CACNA1FO60840 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC23.38■■□□□ 1.33
CACNA1FO60840 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC23.38■■□□□ 1.33
CACNA1FO60840 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC23.38■■□□□ 1.33
CACNA1FO60840 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
CACNA1FO60840 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC23.37■■□□□ 1.33
CACNA1FO60840 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
CACNA1FO60840 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
CACNA1FO60840 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC23.37■■□□□ 1.33
CACNA1FO60840 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
CACNA1FO60840 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC23.37■■□□□ 1.33
CACNA1FO60840 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
CACNA1FO60840 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
CACNA1FO60840 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC23.37■■□□□ 1.33
CACNA1FO60840 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC23.37■■□□□ 1.33
CACNA1FO60840 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC23.37■■□□□ 1.33
CACNA1FO60840 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC23.37■■□□□ 1.33
CACNA1FO60840 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
CACNA1FO60840 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
CACNA1FO60840 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC23.37■■□□□ 1.33
CACNA1FO60840 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC23.37■■□□□ 1.33
CACNA1FO60840 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CACNA1FO60840 AC012615.1-201ENST00000565797 1299 ntBASIC23.36■■□□□ 1.33
CACNA1FO60840 NAA38-203ENST00000575071 553 ntTSL 2 BASIC23.36■■□□□ 1.33
CACNA1FO60840 MIR3180-1-201ENST00000580374 94 ntBASIC23.36■■□□□ 1.33
CACNA1FO60840 MIR3180-3-201ENST00000584616 94 ntBASIC23.36■■□□□ 1.33
CACNA1FO60840 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC23.36■■□□□ 1.33
CACNA1FO60840 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
CACNA1FO60840 NARF-204ENST00000390006 1766 ntTSL 2 BASIC23.36■■□□□ 1.33
CACNA1FO60840 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC23.36■■□□□ 1.33
CACNA1FO60840 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CACNA1FO60840 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC23.36■■□□□ 1.33
CACNA1FO60840 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
CACNA1FO60840 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC23.36■■□□□ 1.33
CACNA1FO60840 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC23.36■■□□□ 1.33
CACNA1FO60840 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CACNA1FO60840 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CACNA1FO60840 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC23.36■■□□□ 1.33
CACNA1FO60840 WIZP1-201ENST00000531444 2299 ntBASIC23.36■■□□□ 1.33
CACNA1FO60840 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC23.36■■□□□ 1.33
CACNA1FO60840 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
CACNA1FO60840 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
CACNA1FO60840 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
CACNA1FO60840 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC23.35■■□□□ 1.33
CACNA1FO60840 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC23.35■■□□□ 1.33
CACNA1FO60840 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC23.35■■□□□ 1.33
CACNA1FO60840 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
CACNA1FO60840 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
CACNA1FO60840 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
CACNA1FO60840 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC23.35■■□□□ 1.33
CACNA1FO60840 CHCHD2P8-201ENST00000429873 447 ntBASIC23.35■■□□□ 1.33
CACNA1FO60840 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC23.35■■□□□ 1.33
CACNA1FO60840 AC091076.1-201ENST00000610741 619 ntBASIC23.35■■□□□ 1.33
CACNA1FO60840 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC23.35■■□□□ 1.33
CACNA1FO60840 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC23.35■■□□□ 1.33
CACNA1FO60840 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC23.35■■□□□ 1.33
CACNA1FO60840 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC23.35■■□□□ 1.33
CACNA1FO60840 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC23.35■■□□□ 1.33
CACNA1FO60840 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC23.35■■□□□ 1.33
CACNA1FO60840 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
CACNA1FO60840 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC23.35■■□□□ 1.33
CACNA1FO60840 ADK-206ENST00000541550 2222 ntTSL 2 BASIC23.35■■□□□ 1.33
CACNA1FO60840 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC23.35■■□□□ 1.33
CACNA1FO60840 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC23.34■■□□□ 1.33
CACNA1FO60840 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC23.34■■□□□ 1.33
CACNA1FO60840 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC23.34■■□□□ 1.33
CACNA1FO60840 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC23.34■■□□□ 1.33
CACNA1FO60840 NPAP1P7-201ENST00000613027 823 ntBASIC23.34■■□□□ 1.33
CACNA1FO60840 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC23.34■■□□□ 1.33
CACNA1FO60840 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC23.34■■□□□ 1.33
CACNA1FO60840 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
CACNA1FO60840 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC23.34■■□□□ 1.33
CACNA1FO60840 LINC00167-201ENST00000530583 1419 ntBASIC23.34■■□□□ 1.33
CACNA1FO60840 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC23.34■■□□□ 1.33
CACNA1FO60840 UBC-206ENST00000538617 1303 ntTSL 5 BASIC23.34■■□□□ 1.33
CACNA1FO60840 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
CACNA1FO60840 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC23.34■■□□□ 1.33
CACNA1FO60840 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC23.34■■□□□ 1.33
CACNA1FO60840 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms