Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 TNRC6C-205ENST00000588061 8419 ntAPPRIS ALT2 TSL 5 BASIC10.36□□□□□ -0.75
CHKB-CPT1BH3BT56 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC10.36□□□□□ -0.75
CHKB-CPT1BH3BT56 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC10.36□□□□□ -0.75
CHKB-CPT1BH3BT56 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 AF131216.4-201ENST00000638924 1588 ntBASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 NID2-208ENST00000617139 3827 ntTSL 5 BASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 C10orf71-201ENST00000374144 5230 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 TREX1-205ENST00000625293 1783 ntBASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 SRC-202ENST00000373558 4304 ntTSL 5 BASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 MIR6765-201ENST00000614092 87 ntBASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 CR559946.2-201ENST00000623684 991 ntBASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 AC005052.1-201ENST00000625181 2492 ntBASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 DSP-202ENST00000418664 7812 ntAPPRIS ALT2 TSL 1 (best) BASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 BAHCC1-201ENST00000307745 10342 ntAPPRIS ALT2 TSL 5 BASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 AC080080.1-201ENST00000625121 2420 ntBASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 AC022211.2-201ENST00000585075 2527 ntBASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC10.35□□□□□ -0.75
CHKB-CPT1BH3BT56 BCORL1-201ENST00000218147 6860 ntAPPRIS P1 TSL 5 BASIC10.34□□□□□ -0.75
CHKB-CPT1BH3BT56 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC10.34□□□□□ -0.75
CHKB-CPT1BH3BT56 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC10.34□□□□□ -0.75
CHKB-CPT1BH3BT56 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC10.34□□□□□ -0.75
CHKB-CPT1BH3BT56 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC10.34□□□□□ -0.75
CHKB-CPT1BH3BT56 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
CHKB-CPT1BH3BT56 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
CHKB-CPT1BH3BT56 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
CHKB-CPT1BH3BT56 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC10.34□□□□□ -0.75
CHKB-CPT1BH3BT56 TGFBR3-201ENST00000212355 6465 ntAPPRIS P3 TSL 1 (best) BASIC10.34□□□□□ -0.75
CHKB-CPT1BH3BT56 TRIM11-204ENST00000493030 5774 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
CHKB-CPT1BH3BT56 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
CHKB-CPT1BH3BT56 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC10.34□□□□□ -0.75
CHKB-CPT1BH3BT56 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC10.34□□□□□ -0.75
CHKB-CPT1BH3BT56 RTEL1-203ENST00000360203 4623 ntAPPRIS P1 TSL 5 BASIC10.34□□□□□ -0.75
CHKB-CPT1BH3BT56 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
CHKB-CPT1BH3BT56 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
CHKB-CPT1BH3BT56 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
CHKB-CPT1BH3BT56 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC10.34□□□□□ -0.75
CHKB-CPT1BH3BT56 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
CHKB-CPT1BH3BT56 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC10.34□□□□□ -0.75
CHKB-CPT1BH3BT56 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
CHKB-CPT1BH3BT56 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC10.34□□□□□ -0.75
CHKB-CPT1BH3BT56 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC10.34□□□□□ -0.75
CHKB-CPT1BH3BT56 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC10.34□□□□□ -0.75
CHKB-CPT1BH3BT56 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC10.34□□□□□ -0.75
CHKB-CPT1BH3BT56 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC10.34□□□□□ -0.75
CHKB-CPT1BH3BT56 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC10.34□□□□□ -0.75
CHKB-CPT1BH3BT56 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
CHKB-CPT1BH3BT56 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC10.34□□□□□ -0.75
CHKB-CPT1BH3BT56 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
CHKB-CPT1BH3BT56 STAC-204ENST00000457375 1366 ntTSL 2 BASIC10.34□□□□□ -0.75
CHKB-CPT1BH3BT56 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC10.34□□□□□ -0.75
CHKB-CPT1BH3BT56 SYMPK-214ENST00000599814 6537 ntTSL 2 BASIC10.34□□□□□ -0.75
CHKB-CPT1BH3BT56 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC10.34□□□□□ -0.75
CHKB-CPT1BH3BT56 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms