Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS28Q9UK41 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VPS28Q9UK41 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VPS28Q9UK41 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS28Q9UK41 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS28Q9UK41 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
VPS28Q9UK41 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC19.17■□□□□ 0.66
VPS28Q9UK41 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS28Q9UK41 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS28Q9UK41 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
VPS28Q9UK41 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS28Q9UK41 AL138781.2-201ENST00000617896 1843 ntBASIC19.17■□□□□ 0.66
VPS28Q9UK41 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS28Q9UK41 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VPS28Q9UK41 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS28Q9UK41 TSPY5P-201ENST00000426936 936 ntBASIC19.17■□□□□ 0.66
VPS28Q9UK41 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
VPS28Q9UK41 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VPS28Q9UK41 AC092647.4-201ENST00000457211 535 ntBASIC19.17■□□□□ 0.66
VPS28Q9UK41 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VPS28Q9UK41 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC19.17■□□□□ 0.66
VPS28Q9UK41 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VPS28Q9UK41 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS28Q9UK41 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VPS28Q9UK41 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS28Q9UK41 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC19.17■□□□□ 0.66
VPS28Q9UK41 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS28Q9UK41 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC19.17■□□□□ 0.66
VPS28Q9UK41 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC19.17■□□□□ 0.66
VPS28Q9UK41 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
VPS28Q9UK41 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VPS28Q9UK41 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC19.17■□□□□ 0.66
VPS28Q9UK41 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
VPS28Q9UK41 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
VPS28Q9UK41 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
VPS28Q9UK41 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC19.16■□□□□ 0.66
VPS28Q9UK41 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS28Q9UK41 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC19.16■□□□□ 0.66
VPS28Q9UK41 GAD2-202ENST00000376248 680 ntTSL 5 BASIC19.16■□□□□ 0.66
VPS28Q9UK41 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC19.16■□□□□ 0.66
VPS28Q9UK41 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC19.16■□□□□ 0.66
VPS28Q9UK41 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
VPS28Q9UK41 LINC01238-205ENST00000567549 1107 ntBASIC19.16■□□□□ 0.66
VPS28Q9UK41 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
VPS28Q9UK41 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS28Q9UK41 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS28Q9UK41 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS28Q9UK41 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS28Q9UK41 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC19.16■□□□□ 0.66
VPS28Q9UK41 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS28Q9UK41 NEFHP1-201ENST00000412845 2629 ntBASIC19.16■□□□□ 0.66
VPS28Q9UK41 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
VPS28Q9UK41 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS28Q9UK41 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
VPS28Q9UK41 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS28Q9UK41 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
VPS28Q9UK41 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC19.15■□□□□ 0.66
VPS28Q9UK41 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
VPS28Q9UK41 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS28Q9UK41 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
VPS28Q9UK41 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC19.15■□□□□ 0.66
VPS28Q9UK41 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC19.15■□□□□ 0.66
VPS28Q9UK41 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
VPS28Q9UK41 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS28Q9UK41 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC19.15■□□□□ 0.66
VPS28Q9UK41 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
VPS28Q9UK41 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC19.15■□□□□ 0.66
VPS28Q9UK41 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC19.15■□□□□ 0.66
VPS28Q9UK41 AC063952.2-201ENST00000498792 1227 ntBASIC19.15■□□□□ 0.66
VPS28Q9UK41 AC022616.7-201ENST00000525383 220 ntBASIC19.15■□□□□ 0.66
VPS28Q9UK41 AL441883.1-201ENST00000566170 1045 ntBASIC19.15■□□□□ 0.66
VPS28Q9UK41 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC19.15■□□□□ 0.66
VPS28Q9UK41 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC19.15■□□□□ 0.66
VPS28Q9UK41 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
VPS28Q9UK41 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS28Q9UK41 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS28Q9UK41 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS28Q9UK41 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC19.15■□□□□ 0.66
VPS28Q9UK41 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS28Q9UK41 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS28Q9UK41 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS28Q9UK41 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
VPS28Q9UK41 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
VPS28Q9UK41 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC19.15■□□□□ 0.66
VPS28Q9UK41 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
VPS28Q9UK41 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
VPS28Q9UK41 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
VPS28Q9UK41 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
VPS28Q9UK41 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.66
VPS28Q9UK41 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
VPS28Q9UK41 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
VPS28Q9UK41 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VPS28Q9UK41 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
VPS28Q9UK41 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
VPS28Q9UK41 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC19.14■□□□□ 0.65
VPS28Q9UK41 KRT18P35-201ENST00000510488 1269 ntBASIC19.14■□□□□ 0.65
VPS28Q9UK41 LTBR-211ENST00000543190 785 ntTSL 3 BASIC19.14■□□□□ 0.65
VPS28Q9UK41 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC19.14■□□□□ 0.65
VPS28Q9UK41 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC19.14■□□□□ 0.65
VPS28Q9UK41 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms