Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIMD1Q9UGP4 BAALC-202ENST00000306391 243 ntTSL 5 BASIC19.42■□□□□ 0.7
LIMD1Q9UGP4 BAALC-204ENST00000330955 222 ntTSL 5 BASIC19.42■□□□□ 0.7
LIMD1Q9UGP4 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC19.42■□□□□ 0.7
LIMD1Q9UGP4 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
LIMD1Q9UGP4 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC19.42■□□□□ 0.7
LIMD1Q9UGP4 PENK-208ENST00000523051 772 ntTSL 5 BASIC19.42■□□□□ 0.7
LIMD1Q9UGP4 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC19.42■□□□□ 0.7
LIMD1Q9UGP4 AC090616.6-201ENST00000582640 721 ntBASIC19.42■□□□□ 0.7
LIMD1Q9UGP4 AC005332.3-201ENST00000589904 676 ntBASIC19.42■□□□□ 0.7
LIMD1Q9UGP4 AC099336.1-202ENST00000602961 463 ntBASIC19.42■□□□□ 0.7
LIMD1Q9UGP4 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC19.42■□□□□ 0.7
LIMD1Q9UGP4 LITAF-220ENST00000620789 692 ntTSL 5 BASIC19.42■□□□□ 0.7
LIMD1Q9UGP4 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
LIMD1Q9UGP4 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIMD1Q9UGP4 RNF165-205ENST00000588679 2904 ntBASIC19.42■□□□□ 0.7
LIMD1Q9UGP4 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
LIMD1Q9UGP4 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LIMD1Q9UGP4 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIMD1Q9UGP4 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIMD1Q9UGP4 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC19.42■□□□□ 0.7
LIMD1Q9UGP4 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIMD1Q9UGP4 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC19.41■□□□□ 0.7
LIMD1Q9UGP4 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIMD1Q9UGP4 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC19.41■□□□□ 0.7
LIMD1Q9UGP4 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIMD1Q9UGP4 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LIMD1Q9UGP4 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIMD1Q9UGP4 SDHAP1-207ENST00000440850 2000 ntBASIC19.41■□□□□ 0.7
LIMD1Q9UGP4 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIMD1Q9UGP4 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC19.41■□□□□ 0.7
LIMD1Q9UGP4 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
LIMD1Q9UGP4 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC19.41■□□□□ 0.7
LIMD1Q9UGP4 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIMD1Q9UGP4 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIMD1Q9UGP4 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC19.41■□□□□ 0.7
LIMD1Q9UGP4 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIMD1Q9UGP4 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LIMD1Q9UGP4 TK1-205ENST00000590862 642 ntTSL 3 BASIC19.41■□□□□ 0.7
LIMD1Q9UGP4 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LIMD1Q9UGP4 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LIMD1Q9UGP4 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC19.41■□□□□ 0.7
LIMD1Q9UGP4 AL162377.1-201ENST00000618844 1793 ntBASIC19.41■□□□□ 0.7
LIMD1Q9UGP4 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIMD1Q9UGP4 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
LIMD1Q9UGP4 BID-204ENST00000399767 2129 ntTSL 2 BASIC19.4■□□□□ 0.7
LIMD1Q9UGP4 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIMD1Q9UGP4 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIMD1Q9UGP4 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIMD1Q9UGP4 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIMD1Q9UGP4 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC19.4■□□□□ 0.7
LIMD1Q9UGP4 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
LIMD1Q9UGP4 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIMD1Q9UGP4 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
LIMD1Q9UGP4 AIRN-201ENST00000601203 4374 ntBASIC19.4■□□□□ 0.7
LIMD1Q9UGP4 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIMD1Q9UGP4 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC19.4■□□□□ 0.7
LIMD1Q9UGP4 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC19.4■□□□□ 0.7
LIMD1Q9UGP4 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
LIMD1Q9UGP4 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC19.4■□□□□ 0.7
LIMD1Q9UGP4 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
LIMD1Q9UGP4 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC19.4■□□□□ 0.7
LIMD1Q9UGP4 NME4-212ENST00000621774 904 ntTSL 3 BASIC19.4■□□□□ 0.7
LIMD1Q9UGP4 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC19.4■□□□□ 0.7
LIMD1Q9UGP4 VPS51-217ENST00000639871 243 ntTSL 5 BASIC19.4■□□□□ 0.7
LIMD1Q9UGP4 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC19.4■□□□□ 0.7
LIMD1Q9UGP4 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIMD1Q9UGP4 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
LIMD1Q9UGP4 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC19.4■□□□□ 0.7
LIMD1Q9UGP4 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC19.4■□□□□ 0.7
LIMD1Q9UGP4 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIMD1Q9UGP4 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIMD1Q9UGP4 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC19.4■□□□□ 0.7
LIMD1Q9UGP4 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
LIMD1Q9UGP4 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.7
LIMD1Q9UGP4 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC19.39■□□□□ 0.7
LIMD1Q9UGP4 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC19.39■□□□□ 0.7
LIMD1Q9UGP4 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
LIMD1Q9UGP4 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
LIMD1Q9UGP4 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIMD1Q9UGP4 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIMD1Q9UGP4 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIMD1Q9UGP4 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIMD1Q9UGP4 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIMD1Q9UGP4 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIMD1Q9UGP4 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIMD1Q9UGP4 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC19.39■□□□□ 0.69
LIMD1Q9UGP4 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.69
LIMD1Q9UGP4 AC117500.6-201ENST00000624871 588 ntBASIC19.39■□□□□ 0.69
LIMD1Q9UGP4 AF228730.7-201ENST00000641842 219 ntBASIC19.39■□□□□ 0.69
LIMD1Q9UGP4 AC233702.3-201ENST00000578656 1387 ntBASIC19.39■□□□□ 0.69
LIMD1Q9UGP4 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
LIMD1Q9UGP4 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIMD1Q9UGP4 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC19.39■□□□□ 0.69
LIMD1Q9UGP4 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC19.39■□□□□ 0.69
LIMD1Q9UGP4 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC19.39■□□□□ 0.69
LIMD1Q9UGP4 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIMD1Q9UGP4 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC19.39■□□□□ 0.69
LIMD1Q9UGP4 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIMD1Q9UGP4 GOLGA6L5P-202ENST00000515341 1828 ntBASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms