Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC20.06■□□□□ 0.8
CNTN3Q9P232 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC20.06■□□□□ 0.8
CNTN3Q9P232 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
CNTN3Q9P232 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC20.06■□□□□ 0.8
CNTN3Q9P232 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
CNTN3Q9P232 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC20.06■□□□□ 0.8
CNTN3Q9P232 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CNTN3Q9P232 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
CNTN3Q9P232 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC20.06■□□□□ 0.8
CNTN3Q9P232 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CNTN3Q9P232 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC20.06■□□□□ 0.8
CNTN3Q9P232 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC20.06■□□□□ 0.8
CNTN3Q9P232 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CNTN3Q9P232 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CNTN3Q9P232 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CNTN3Q9P232 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CNTN3Q9P232 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC20.05■□□□□ 0.8
CNTN3Q9P232 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC20.05■□□□□ 0.8
CNTN3Q9P232 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
CNTN3Q9P232 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC20.05■□□□□ 0.8
CNTN3Q9P232 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CNTN3Q9P232 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CNTN3Q9P232 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CNTN3Q9P232 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CNTN3Q9P232 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CNTN3Q9P232 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CNTN3Q9P232 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CNTN3Q9P232 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC20.05■□□□□ 0.8
CNTN3Q9P232 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC20.05■□□□□ 0.8
CNTN3Q9P232 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CNTN3Q9P232 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CNTN3Q9P232 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CNTN3Q9P232 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CNTN3Q9P232 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CNTN3Q9P232 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
CNTN3Q9P232 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CNTN3Q9P232 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC20.05■□□□□ 0.8
CNTN3Q9P232 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC20.05■□□□□ 0.8
CNTN3Q9P232 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
CNTN3Q9P232 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CNTN3Q9P232 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
CNTN3Q9P232 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CNTN3Q9P232 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
CNTN3Q9P232 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC20.04■□□□□ 0.8
CNTN3Q9P232 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CNTN3Q9P232 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
CNTN3Q9P232 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
CNTN3Q9P232 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CNTN3Q9P232 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CNTN3Q9P232 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CNTN3Q9P232 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
CNTN3Q9P232 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC20.04■□□□□ 0.8
CNTN3Q9P232 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC20.04■□□□□ 0.8
CNTN3Q9P232 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC20.04■□□□□ 0.8
CNTN3Q9P232 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CNTN3Q9P232 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CNTN3Q9P232 AL391807.1-203ENST00000604392 2365 ntBASIC20.04■□□□□ 0.8
CNTN3Q9P232 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CNTN3Q9P232 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CNTN3Q9P232 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC20.04■□□□□ 0.8
CNTN3Q9P232 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC20.04■□□□□ 0.8
CNTN3Q9P232 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC20.04■□□□□ 0.8
CNTN3Q9P232 AL136038.4-201ENST00000603606 1261 ntBASIC20.04■□□□□ 0.8
CNTN3Q9P232 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CNTN3Q9P232 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC20.04■□□□□ 0.8
CNTN3Q9P232 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CNTN3Q9P232 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
CNTN3Q9P232 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC20.04■□□□□ 0.8
CNTN3Q9P232 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CNTN3Q9P232 SNAI3-AS1-205ENST00000568633 2096 ntBASIC20.04■□□□□ 0.8
CNTN3Q9P232 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CNTN3Q9P232 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC20.04■□□□□ 0.8
CNTN3Q9P232 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC20.04■□□□□ 0.8
CNTN3Q9P232 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.04■□□□□ 0.8
CNTN3Q9P232 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC20.04■□□□□ 0.8
CNTN3Q9P232 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CNTN3Q9P232 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
CNTN3Q9P232 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CNTN3Q9P232 TNXA-203ENST00000507684 2038 ntBASIC20.03■□□□□ 0.8
CNTN3Q9P232 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CNTN3Q9P232 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
CNTN3Q9P232 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CNTN3Q9P232 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC20.03■□□□□ 0.8
CNTN3Q9P232 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC20.03■□□□□ 0.8
CNTN3Q9P232 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
CNTN3Q9P232 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC20.03■□□□□ 0.8
CNTN3Q9P232 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CNTN3Q9P232 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC20.03■□□□□ 0.8
CNTN3Q9P232 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
CNTN3Q9P232 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CNTN3Q9P232 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CNTN3Q9P232 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CNTN3Q9P232 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC20.03■□□□□ 0.8
CNTN3Q9P232 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CNTN3Q9P232 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CNTN3Q9P232 AP000593.1-201ENST00000393668 712 ntBASIC20.03■□□□□ 0.8
CNTN3Q9P232 UPK3BP1-201ENST00000428678 509 ntBASIC20.03■□□□□ 0.8
CNTN3Q9P232 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CNTN3Q9P232 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC20.03■□□□□ 0.8
CNTN3Q9P232 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms