Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
NKX2-3Q8TAU0 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
NKX2-3Q8TAU0 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
NKX2-3Q8TAU0 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC22.05■■□□□ 1.12
NKX2-3Q8TAU0 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC22.05■■□□□ 1.12
NKX2-3Q8TAU0 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
NKX2-3Q8TAU0 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
NKX2-3Q8TAU0 BX323043.1-201ENST00000641006 1765 ntBASIC22.05■■□□□ 1.12
NKX2-3Q8TAU0 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC22.05■■□□□ 1.12
NKX2-3Q8TAU0 KRT18P38-201ENST00000449496 1282 ntBASIC22.05■■□□□ 1.12
NKX2-3Q8TAU0 ETFA-216ENST00000560726 942 ntTSL 3 BASIC22.05■■□□□ 1.12
NKX2-3Q8TAU0 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC22.05■■□□□ 1.12
NKX2-3Q8TAU0 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
NKX2-3Q8TAU0 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC22.05■■□□□ 1.12
NKX2-3Q8TAU0 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC22.05■■□□□ 1.12
NKX2-3Q8TAU0 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
NKX2-3Q8TAU0 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
NKX2-3Q8TAU0 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC22.05■■□□□ 1.12
NKX2-3Q8TAU0 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
NKX2-3Q8TAU0 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC22.04■■□□□ 1.12
NKX2-3Q8TAU0 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
NKX2-3Q8TAU0 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
NKX2-3Q8TAU0 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
NKX2-3Q8TAU0 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC22.04■■□□□ 1.12
NKX2-3Q8TAU0 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
NKX2-3Q8TAU0 AC004870.1-201ENST00000315132 882 ntBASIC22.04■■□□□ 1.12
NKX2-3Q8TAU0 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
NKX2-3Q8TAU0 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
NKX2-3Q8TAU0 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
NKX2-3Q8TAU0 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC22.04■■□□□ 1.12
NKX2-3Q8TAU0 GCSHP2-201ENST00000560971 527 ntBASIC22.04■■□□□ 1.12
NKX2-3Q8TAU0 RN7SL510P-201ENST00000581311 263 ntBASIC22.04■■□□□ 1.12
NKX2-3Q8TAU0 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC22.04■■□□□ 1.12
NKX2-3Q8TAU0 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC22.04■■□□□ 1.12
NKX2-3Q8TAU0 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC22.04■■□□□ 1.12
NKX2-3Q8TAU0 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
NKX2-3Q8TAU0 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC22.04■■□□□ 1.12
NKX2-3Q8TAU0 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC22.04■■□□□ 1.12
NKX2-3Q8TAU0 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC22.04■■□□□ 1.12
NKX2-3Q8TAU0 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
NKX2-3Q8TAU0 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC22.03■■□□□ 1.12
NKX2-3Q8TAU0 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC22.03■■□□□ 1.12
NKX2-3Q8TAU0 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC22.03■■□□□ 1.12
NKX2-3Q8TAU0 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
NKX2-3Q8TAU0 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
NKX2-3Q8TAU0 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
NKX2-3Q8TAU0 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
NKX2-3Q8TAU0 Z98044.1-201ENST00000632503 1764 ntBASIC22.03■■□□□ 1.12
NKX2-3Q8TAU0 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
NKX2-3Q8TAU0 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
NKX2-3Q8TAU0 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
NKX2-3Q8TAU0 ENSA-205ENST00000361532 792 ntTSL 2 BASIC22.03■■□□□ 1.12
NKX2-3Q8TAU0 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC22.03■■□□□ 1.12
NKX2-3Q8TAU0 PHB2-202ENST00000440277 996 ntTSL 5 BASIC22.03■■□□□ 1.12
NKX2-3Q8TAU0 SDHD-206ENST00000528182 754 ntTSL 3 BASIC22.03■■□□□ 1.12
NKX2-3Q8TAU0 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC22.03■■□□□ 1.12
NKX2-3Q8TAU0 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC22.03■■□□□ 1.12
NKX2-3Q8TAU0 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
NKX2-3Q8TAU0 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC22.03■■□□□ 1.12
NKX2-3Q8TAU0 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC22.03■■□□□ 1.12
NKX2-3Q8TAU0 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC22.03■■□□□ 1.12
NKX2-3Q8TAU0 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC22.03■■□□□ 1.12
NKX2-3Q8TAU0 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
NKX2-3Q8TAU0 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
NKX2-3Q8TAU0 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
NKX2-3Q8TAU0 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
NKX2-3Q8TAU0 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
NKX2-3Q8TAU0 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC22.02■■□□□ 1.12
NKX2-3Q8TAU0 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
NKX2-3Q8TAU0 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC22.02■■□□□ 1.12
NKX2-3Q8TAU0 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
NKX2-3Q8TAU0 COBL-210ENST00000632460 1941 ntTSL 5 BASIC22.02■■□□□ 1.12
NKX2-3Q8TAU0 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC22.02■■□□□ 1.12
NKX2-3Q8TAU0 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC22.02■■□□□ 1.12
NKX2-3Q8TAU0 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
NKX2-3Q8TAU0 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
NKX2-3Q8TAU0 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
NKX2-3Q8TAU0 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
NKX2-3Q8TAU0 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
NKX2-3Q8TAU0 PVRIG2P-201ENST00000435460 978 ntBASIC22.02■■□□□ 1.12
NKX2-3Q8TAU0 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC22.02■■□□□ 1.12
NKX2-3Q8TAU0 ELP6-205ENST00000439305 880 ntTSL 2 BASIC22.02■■□□□ 1.12
NKX2-3Q8TAU0 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC22.02■■□□□ 1.12
NKX2-3Q8TAU0 ZNF444P1-201ENST00000559497 298 ntBASIC22.02■■□□□ 1.12
NKX2-3Q8TAU0 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC22.02■■□□□ 1.12
NKX2-3Q8TAU0 PRR29-207ENST00000580752 458 ntTSL 3 BASIC22.02■■□□□ 1.12
NKX2-3Q8TAU0 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
NKX2-3Q8TAU0 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC22.02■■□□□ 1.12
NKX2-3Q8TAU0 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC22.02■■□□□ 1.12
NKX2-3Q8TAU0 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
NKX2-3Q8TAU0 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC22.02■■□□□ 1.12
NKX2-3Q8TAU0 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.12
NKX2-3Q8TAU0 AC093525.10-201ENST00000625130 1569 ntBASIC22.02■■□□□ 1.12
NKX2-3Q8TAU0 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
NKX2-3Q8TAU0 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC22.02■■□□□ 1.12
NKX2-3Q8TAU0 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC22.02■■□□□ 1.12
NKX2-3Q8TAU0 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC22.02■■□□□ 1.11
NKX2-3Q8TAU0 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
NKX2-3Q8TAU0 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
NKX2-3Q8TAU0 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC22.01■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms