Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
ERCC3P19447 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
ERCC3P19447 HLA-F-220ENST00000434407 884 ntBASIC21.55■■□□□ 1.04
ERCC3P19447 AP002383.4-201ENST00000442518 975 ntBASIC21.55■■□□□ 1.04
ERCC3P19447 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC21.55■■□□□ 1.04
ERCC3P19447 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC21.55■■□□□ 1.04
ERCC3P19447 PRELID1P1-202ENST00000567272 903 ntBASIC21.55■■□□□ 1.04
ERCC3P19447 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC21.55■■□□□ 1.04
ERCC3P19447 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
ERCC3P19447 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
ERCC3P19447 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
ERCC3P19447 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
ERCC3P19447 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC21.55■■□□□ 1.04
ERCC3P19447 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
ERCC3P19447 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
ERCC3P19447 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
ERCC3P19447 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC21.54■■□□□ 1.04
ERCC3P19447 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC21.54■■□□□ 1.04
ERCC3P19447 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC21.54■■□□□ 1.04
ERCC3P19447 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
ERCC3P19447 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
ERCC3P19447 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
ERCC3P19447 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
ERCC3P19447 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
ERCC3P19447 TP73-202ENST00000354437 2140 ntTSL 5 BASIC21.54■■□□□ 1.04
ERCC3P19447 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
ERCC3P19447 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC21.54■■□□□ 1.04
ERCC3P19447 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
ERCC3P19447 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC21.54■■□□□ 1.04
ERCC3P19447 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC21.54■■□□□ 1.04
ERCC3P19447 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC21.54■■□□□ 1.04
ERCC3P19447 SDHD-206ENST00000528182 754 ntTSL 3 BASIC21.54■■□□□ 1.04
ERCC3P19447 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC21.54■■□□□ 1.04
ERCC3P19447 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC21.54■■□□□ 1.04
ERCC3P19447 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
ERCC3P19447 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
ERCC3P19447 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
ERCC3P19447 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
ERCC3P19447 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
ERCC3P19447 Z82202.1-201ENST00000623446 1880 ntBASIC21.54■■□□□ 1.04
ERCC3P19447 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
ERCC3P19447 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
ERCC3P19447 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
ERCC3P19447 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
ERCC3P19447 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
ERCC3P19447 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
ERCC3P19447 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC21.53■■□□□ 1.04
ERCC3P19447 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
ERCC3P19447 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC21.53■■□□□ 1.04
ERCC3P19447 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
ERCC3P19447 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
ERCC3P19447 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC21.53■■□□□ 1.04
ERCC3P19447 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
ERCC3P19447 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
ERCC3P19447 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC21.53■■□□□ 1.04
ERCC3P19447 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC21.53■■□□□ 1.04
ERCC3P19447 MIR3917-201ENST00000580971 93 ntBASIC21.53■■□□□ 1.04
ERCC3P19447 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC21.53■■□□□ 1.04
ERCC3P19447 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
ERCC3P19447 WDR6-223ENST00000627177 207 ntTSL 2 BASIC21.53■■□□□ 1.04
ERCC3P19447 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC21.53■■□□□ 1.04
ERCC3P19447 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC21.53■■□□□ 1.04
ERCC3P19447 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
ERCC3P19447 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
ERCC3P19447 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
ERCC3P19447 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC21.53■■□□□ 1.04
ERCC3P19447 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC21.53■■□□□ 1.04
ERCC3P19447 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC21.53■■□□□ 1.04
ERCC3P19447 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
ERCC3P19447 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC21.53■■□□□ 1.04
ERCC3P19447 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC21.52■■□□□ 1.04
ERCC3P19447 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.04
ERCC3P19447 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
ERCC3P19447 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
ERCC3P19447 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
ERCC3P19447 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
ERCC3P19447 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
ERCC3P19447 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC21.52■■□□□ 1.04
ERCC3P19447 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
ERCC3P19447 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC21.52■■□□□ 1.04
ERCC3P19447 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC21.52■■□□□ 1.04
ERCC3P19447 AL136038.4-201ENST00000603606 1261 ntBASIC21.52■■□□□ 1.04
ERCC3P19447 SPEG-225ENST00000617028 815 ntTSL 5 BASIC21.52■■□□□ 1.04
ERCC3P19447 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC21.52■■□□□ 1.04
ERCC3P19447 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
ERCC3P19447 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC21.52■■□□□ 1.04
ERCC3P19447 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC21.52■■□□□ 1.04
ERCC3P19447 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
ERCC3P19447 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
ERCC3P19447 AL391807.1-203ENST00000604392 2365 ntBASIC21.52■■□□□ 1.04
ERCC3P19447 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.03
ERCC3P19447 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC21.52■■□□□ 1.03
ERCC3P19447 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
ERCC3P19447 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC21.52■■□□□ 1.03
ERCC3P19447 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC21.52■■□□□ 1.03
ERCC3P19447 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.03
ERCC3P19447 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
ERCC3P19447 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
ERCC3P19447 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
ERCC3P19447 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms