Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 AL358472.4-201ENST00000633140 710 ntBASIC19.06■□□□□ 0.64
CBX4O00257 AL357033.4-201ENST00000617703 1807 ntBASIC19.06■□□□□ 0.64
CBX4O00257 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CBX4O00257 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CBX4O00257 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC19.06■□□□□ 0.64
CBX4O00257 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CBX4O00257 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
CBX4O00257 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
CBX4O00257 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
CBX4O00257 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CBX4O00257 MTMR9LP-203ENST00000426597 1545 ntBASIC19.05■□□□□ 0.64
CBX4O00257 NFYC-AS1-201ENST00000606277 1687 ntBASIC19.05■□□□□ 0.64
CBX4O00257 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CBX4O00257 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC19.05■□□□□ 0.64
CBX4O00257 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
CBX4O00257 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC19.05■□□□□ 0.64
CBX4O00257 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
CBX4O00257 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC19.05■□□□□ 0.64
CBX4O00257 AC092647.4-201ENST00000457211 535 ntBASIC19.05■□□□□ 0.64
CBX4O00257 AC022616.7-201ENST00000525383 220 ntBASIC19.05■□□□□ 0.64
CBX4O00257 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC19.05■□□□□ 0.64
CBX4O00257 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC19.05■□□□□ 0.64
CBX4O00257 ETFA-216ENST00000560726 942 ntTSL 3 BASIC19.05■□□□□ 0.64
CBX4O00257 GCSHP2-201ENST00000560971 527 ntBASIC19.05■□□□□ 0.64
CBX4O00257 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC19.05■□□□□ 0.64
CBX4O00257 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CBX4O00257 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC19.05■□□□□ 0.64
CBX4O00257 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC19.05■□□□□ 0.64
CBX4O00257 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC19.05■□□□□ 0.64
CBX4O00257 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
CBX4O00257 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
CBX4O00257 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
CBX4O00257 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC19.05■□□□□ 0.64
CBX4O00257 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CBX4O00257 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
CBX4O00257 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC19.05■□□□□ 0.64
CBX4O00257 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
CBX4O00257 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC19.05■□□□□ 0.64
CBX4O00257 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
CBX4O00257 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
CBX4O00257 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CBX4O00257 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC19.05■□□□□ 0.64
CBX4O00257 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
CBX4O00257 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
CBX4O00257 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CBX4O00257 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CBX4O00257 AP000974.1-201ENST00000623909 2387 ntBASIC19.04■□□□□ 0.64
CBX4O00257 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CBX4O00257 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC19.04■□□□□ 0.64
CBX4O00257 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
CBX4O00257 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC19.04■□□□□ 0.64
CBX4O00257 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC19.04■□□□□ 0.64
CBX4O00257 AC063952.2-201ENST00000498792 1227 ntBASIC19.04■□□□□ 0.64
CBX4O00257 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC19.04■□□□□ 0.64
CBX4O00257 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CBX4O00257 AC112497.1-201ENST00000624824 639 ntBASIC19.04■□□□□ 0.64
CBX4O00257 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
CBX4O00257 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CBX4O00257 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC19.04■□□□□ 0.64
CBX4O00257 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
CBX4O00257 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC19.04■□□□□ 0.64
CBX4O00257 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC19.04■□□□□ 0.64
CBX4O00257 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CBX4O00257 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CBX4O00257 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CBX4O00257 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC19.03■□□□□ 0.64
CBX4O00257 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CBX4O00257 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC19.03■□□□□ 0.64
CBX4O00257 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CBX4O00257 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC19.03■□□□□ 0.64
CBX4O00257 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CBX4O00257 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CBX4O00257 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CBX4O00257 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC19.03■□□□□ 0.64
CBX4O00257 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CBX4O00257 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC19.03■□□□□ 0.64
CBX4O00257 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CBX4O00257 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
CBX4O00257 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CBX4O00257 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CBX4O00257 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
CBX4O00257 UPK3BP1-201ENST00000428678 509 ntBASIC19.03■□□□□ 0.64
CBX4O00257 GRAMD4P1-201ENST00000435181 1110 ntBASIC19.03■□□□□ 0.64
CBX4O00257 KRT18P23-201ENST00000435622 1283 ntBASIC19.03■□□□□ 0.64
CBX4O00257 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC19.03■□□□□ 0.64
CBX4O00257 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CBX4O00257 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CBX4O00257 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CBX4O00257 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
CBX4O00257 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CBX4O00257 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CBX4O00257 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CBX4O00257 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CBX4O00257 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CBX4O00257 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
CBX4O00257 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CBX4O00257 AC034236.2-201ENST00000606662 1610 ntBASIC19.03■□□□□ 0.64
CBX4O00257 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CBX4O00257 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CBX4O00257 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 69.4 ms