Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
COL6A6A6NMZ7 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
COL6A6A6NMZ7 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
COL6A6A6NMZ7 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
COL6A6A6NMZ7 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.27
COL6A6A6NMZ7 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC16.77■□□□□ 0.27
COL6A6A6NMZ7 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC16.77■□□□□ 0.27
COL6A6A6NMZ7 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
COL6A6A6NMZ7 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC16.77■□□□□ 0.27
COL6A6A6NMZ7 AP005117.1-201ENST00000584346 1413 ntBASIC16.77■□□□□ 0.27
COL6A6A6NMZ7 MTDHP3-201ENST00000594186 672 ntBASIC16.77■□□□□ 0.27
COL6A6A6NMZ7 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC16.77■□□□□ 0.27
COL6A6A6NMZ7 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
COL6A6A6NMZ7 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC16.77■□□□□ 0.27
COL6A6A6NMZ7 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
COL6A6A6NMZ7 PBK-203ENST00000522944 1499 ntTSL 2 BASIC16.77■□□□□ 0.27
COL6A6A6NMZ7 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
COL6A6A6NMZ7 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
COL6A6A6NMZ7 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
COL6A6A6NMZ7 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A6A6NMZ7 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A6A6NMZ7 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC16.76■□□□□ 0.27
COL6A6A6NMZ7 MCCD1P2-201ENST00000423228 335 ntBASIC16.76■□□□□ 0.27
COL6A6A6NMZ7 CFL1-202ENST00000524553 860 ntTSL 2 BASIC16.76■□□□□ 0.27
COL6A6A6NMZ7 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC16.76■□□□□ 0.27
COL6A6A6NMZ7 AC104390.1-201ENST00000555663 520 ntBASIC16.76■□□□□ 0.27
COL6A6A6NMZ7 AC012640.2-201ENST00000561606 901 ntBASIC16.76■□□□□ 0.27
COL6A6A6NMZ7 GZMM-202ENST00000592501 941 ntTSL 3 BASIC16.76■□□□□ 0.27
COL6A6A6NMZ7 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC16.76■□□□□ 0.27
COL6A6A6NMZ7 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
COL6A6A6NMZ7 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
COL6A6A6NMZ7 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A6A6NMZ7 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
COL6A6A6NMZ7 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A6A6NMZ7 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A6A6NMZ7 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC16.76■□□□□ 0.27
COL6A6A6NMZ7 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A6A6NMZ7 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A6A6NMZ7 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A6A6NMZ7 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A6A6NMZ7 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
COL6A6A6NMZ7 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A6A6NMZ7 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A6A6NMZ7 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A6A6NMZ7 AC254562.1-201ENST00000417586 456 ntBASIC16.76■□□□□ 0.27
COL6A6A6NMZ7 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC16.76■□□□□ 0.27
COL6A6A6NMZ7 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A6A6NMZ7 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC16.76■□□□□ 0.27
COL6A6A6NMZ7 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC16.76■□□□□ 0.27
COL6A6A6NMZ7 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC16.76■□□□□ 0.27
COL6A6A6NMZ7 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A6A6NMZ7 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC16.76■□□□□ 0.27
COL6A6A6NMZ7 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A6A6NMZ7 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A6A6NMZ7 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
COL6A6A6NMZ7 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL6A6A6NMZ7 SDHAP1-207ENST00000440850 2000 ntBASIC16.75■□□□□ 0.27
COL6A6A6NMZ7 AC099343.3-201ENST00000605834 2503 ntBASIC16.75■□□□□ 0.27
COL6A6A6NMZ7 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL6A6A6NMZ7 CNN2P11-201ENST00000429351 262 ntBASIC16.75■□□□□ 0.27
COL6A6A6NMZ7 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL6A6A6NMZ7 AC021087.4-201ENST00000563761 564 ntBASIC16.75■□□□□ 0.27
COL6A6A6NMZ7 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC16.75■□□□□ 0.27
COL6A6A6NMZ7 PRR29-209ENST00000582540 967 ntTSL 2 BASIC16.75■□□□□ 0.27
COL6A6A6NMZ7 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL6A6A6NMZ7 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
COL6A6A6NMZ7 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL6A6A6NMZ7 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL6A6A6NMZ7 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL6A6A6NMZ7 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL6A6A6NMZ7 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL6A6A6NMZ7 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL6A6A6NMZ7 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL6A6A6NMZ7 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC16.75■□□□□ 0.27
COL6A6A6NMZ7 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC16.75■□□□□ 0.27
COL6A6A6NMZ7 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL6A6A6NMZ7 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL6A6A6NMZ7 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC16.74■□□□□ 0.27
COL6A6A6NMZ7 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL6A6A6NMZ7 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC16.74■□□□□ 0.27
COL6A6A6NMZ7 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC16.74■□□□□ 0.27
COL6A6A6NMZ7 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL6A6A6NMZ7 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC16.74■□□□□ 0.27
COL6A6A6NMZ7 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL6A6A6NMZ7 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL6A6A6NMZ7 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL6A6A6NMZ7 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL6A6A6NMZ7 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC16.74■□□□□ 0.27
COL6A6A6NMZ7 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL6A6A6NMZ7 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC16.74■□□□□ 0.27
COL6A6A6NMZ7 AL096865.1-201ENST00000606796 927 ntBASIC16.74■□□□□ 0.27
COL6A6A6NMZ7 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
COL6A6A6NMZ7 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
COL6A6A6NMZ7 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL6A6A6NMZ7 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC16.74■□□□□ 0.27
COL6A6A6NMZ7 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL6A6A6NMZ7 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL6A6A6NMZ7 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC16.74■□□□□ 0.27
COL6A6A6NMZ7 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
COL6A6A6NMZ7 ENSA-205ENST00000361532 792 ntTSL 2 BASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms