Protein–RNA interactions for Protein: P55290

CDH13, Cadherin-13, humanhuman

Predictions only

Length 713 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13P55290 NOC2LP1-202ENST00000452600 2235 ntBASIC18.3■□□□□ 0.52
CDH13P55290 HTR7P1-202ENST00000624664 4411 ntBASIC18.3■□□□□ 0.52
CDH13P55290 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC18.3■□□□□ 0.52
CDH13P55290 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CDH13P55290 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC18.3■□□□□ 0.52
CDH13P55290 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDH13P55290 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC18.29■□□□□ 0.52
CDH13P55290 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC18.29■□□□□ 0.52
CDH13P55290 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
CDH13P55290 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC18.29■□□□□ 0.52
CDH13P55290 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CDH13P55290 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC18.29■□□□□ 0.52
CDH13P55290 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
CDH13P55290 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
CDH13P55290 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDH13P55290 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CDH13P55290 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDH13P55290 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDH13P55290 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDH13P55290 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
CDH13P55290 AC008040.2-201ENST00000461049 708 ntBASIC18.29■□□□□ 0.52
CDH13P55290 CD99P1-205ENST00000527459 561 ntBASIC18.29■□□□□ 0.52
CDH13P55290 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC18.29■□□□□ 0.52
CDH13P55290 CR392000.1-201ENST00000624770 1228 ntBASIC18.29■□□□□ 0.52
CDH13P55290 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDH13P55290 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
CDH13P55290 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDH13P55290 KRT8P3-201ENST00000519669 1449 ntBASIC18.29■□□□□ 0.52
CDH13P55290 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDH13P55290 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDH13P55290 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CDH13P55290 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC18.29■□□□□ 0.52
CDH13P55290 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDH13P55290 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDH13P55290 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
CDH13P55290 AC090340.1-201ENST00000620778 4980 ntBASIC18.29■□□□□ 0.52
CDH13P55290 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC18.29■□□□□ 0.52
CDH13P55290 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH13P55290 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH13P55290 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC18.28■□□□□ 0.52
CDH13P55290 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CDH13P55290 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH13P55290 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH13P55290 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC18.28■□□□□ 0.52
CDH13P55290 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH13P55290 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH13P55290 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH13P55290 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH13P55290 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH13P55290 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
CDH13P55290 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC18.28■□□□□ 0.52
CDH13P55290 AC004951.3-201ENST00000418645 1148 ntBASIC18.28■□□□□ 0.52
CDH13P55290 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH13P55290 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC18.28■□□□□ 0.52
CDH13P55290 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH13P55290 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC18.28■□□□□ 0.52
CDH13P55290 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC18.28■□□□□ 0.52
CDH13P55290 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH13P55290 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH13P55290 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH13P55290 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18.28■□□□□ 0.52
CDH13P55290 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH13P55290 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH13P55290 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
CDH13P55290 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDH13P55290 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CDH13P55290 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CDH13P55290 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
CDH13P55290 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC18.27■□□□□ 0.52
CDH13P55290 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CDH13P55290 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CDH13P55290 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CDH13P55290 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CDH13P55290 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CDH13P55290 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC18.27■□□□□ 0.52
CDH13P55290 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
CDH13P55290 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
CDH13P55290 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
CDH13P55290 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
CDH13P55290 RPPH1-201ENST00000516869 333 ntBASIC18.27■□□□□ 0.52
CDH13P55290 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC18.27■□□□□ 0.52
CDH13P55290 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
CDH13P55290 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
CDH13P55290 AL357033.4-201ENST00000617703 1807 ntBASIC18.27■□□□□ 0.52
CDH13P55290 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC18.27■□□□□ 0.52
CDH13P55290 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
CDH13P55290 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CDH13P55290 ABALON-201ENST00000629058 1903 ntBASIC18.27■□□□□ 0.51
CDH13P55290 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CDH13P55290 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
CDH13P55290 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC18.27■□□□□ 0.51
CDH13P55290 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CDH13P55290 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.51
CDH13P55290 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
CDH13P55290 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
CDH13P55290 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CDH13P55290 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CDH13P55290 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC18.26■□□□□ 0.51
CDH13P55290 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC18.26■□□□□ 0.51
CDH13P55290 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms