Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC21.56■■□□□ 1.04
HMGCS2P54868 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC21.56■■□□□ 1.04
HMGCS2P54868 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
HMGCS2P54868 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC21.56■■□□□ 1.04
HMGCS2P54868 AC024563.2-201ENST00000603282 481 ntBASIC21.56■■□□□ 1.04
HMGCS2P54868 AL592071.1-201ENST00000611956 408 ntBASIC21.56■■□□□ 1.04
HMGCS2P54868 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC21.56■■□□□ 1.04
HMGCS2P54868 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HMGCS2P54868 AC141586.3-201ENST00000562166 1838 ntBASIC21.56■■□□□ 1.04
HMGCS2P54868 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC21.56■■□□□ 1.04
HMGCS2P54868 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
HMGCS2P54868 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HMGCS2P54868 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
HMGCS2P54868 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
HMGCS2P54868 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
HMGCS2P54868 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC21.56■■□□□ 1.04
HMGCS2P54868 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
HMGCS2P54868 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HMGCS2P54868 AL158211.5-201ENST00000623583 2518 ntBASIC21.55■■□□□ 1.04
HMGCS2P54868 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
HMGCS2P54868 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
HMGCS2P54868 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC21.55■■□□□ 1.04
HMGCS2P54868 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
HMGCS2P54868 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
HMGCS2P54868 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC21.55■■□□□ 1.04
HMGCS2P54868 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC21.55■■□□□ 1.04
HMGCS2P54868 BMF-207ENST00000559701 630 ntTSL 3 BASIC21.55■■□□□ 1.04
HMGCS2P54868 Z69720.1-201ENST00000601483 472 ntBASIC21.55■■□□□ 1.04
HMGCS2P54868 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC21.55■■□□□ 1.04
HMGCS2P54868 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
HMGCS2P54868 AC124864.1-201ENST00000623408 392 ntBASIC21.55■■□□□ 1.04
HMGCS2P54868 AC068587.9-201ENST00000641814 219 ntBASIC21.55■■□□□ 1.04
HMGCS2P54868 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC21.55■■□□□ 1.04
HMGCS2P54868 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC21.55■■□□□ 1.04
HMGCS2P54868 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
HMGCS2P54868 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
HMGCS2P54868 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
HMGCS2P54868 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
HMGCS2P54868 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
HMGCS2P54868 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC21.55■■□□□ 1.04
HMGCS2P54868 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC21.55■■□□□ 1.04
HMGCS2P54868 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
HMGCS2P54868 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
HMGCS2P54868 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
HMGCS2P54868 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
HMGCS2P54868 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
HMGCS2P54868 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
HMGCS2P54868 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
HMGCS2P54868 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
HMGCS2P54868 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
HMGCS2P54868 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
HMGCS2P54868 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
HMGCS2P54868 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC21.54■■□□□ 1.04
HMGCS2P54868 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC21.54■■□□□ 1.04
HMGCS2P54868 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
HMGCS2P54868 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
HMGCS2P54868 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
HMGCS2P54868 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
HMGCS2P54868 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC21.54■■□□□ 1.04
HMGCS2P54868 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
HMGCS2P54868 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC21.54■■□□□ 1.04
HMGCS2P54868 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
HMGCS2P54868 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
HMGCS2P54868 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
HMGCS2P54868 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
HMGCS2P54868 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC21.53■■□□□ 1.04
HMGCS2P54868 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC21.53■■□□□ 1.04
HMGCS2P54868 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC21.53■■□□□ 1.04
HMGCS2P54868 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
HMGCS2P54868 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
HMGCS2P54868 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
HMGCS2P54868 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
HMGCS2P54868 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
HMGCS2P54868 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
HMGCS2P54868 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
HMGCS2P54868 DFFB-203ENST00000341385 572 ntTSL 5 BASIC21.53■■□□□ 1.04
HMGCS2P54868 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC21.53■■□□□ 1.04
HMGCS2P54868 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
HMGCS2P54868 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
HMGCS2P54868 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
HMGCS2P54868 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC21.53■■□□□ 1.04
HMGCS2P54868 IGHV3-47-201ENST00000425060 335 ntBASIC21.53■■□□□ 1.04
HMGCS2P54868 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC21.53■■□□□ 1.04
HMGCS2P54868 KRT16P4-201ENST00000453883 522 ntBASIC21.53■■□□□ 1.04
HMGCS2P54868 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC21.53■■□□□ 1.04
HMGCS2P54868 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC21.53■■□□□ 1.04
HMGCS2P54868 AP002469.2-201ENST00000531724 424 ntBASIC21.53■■□□□ 1.04
HMGCS2P54868 REEP1-209ENST00000541910 969 ntTSL 2 BASIC21.53■■□□□ 1.04
HMGCS2P54868 TPM1-218ENST00000559281 851 ntTSL 5 BASIC21.53■■□□□ 1.04
HMGCS2P54868 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
HMGCS2P54868 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
HMGCS2P54868 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
HMGCS2P54868 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC21.53■■□□□ 1.04
HMGCS2P54868 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
HMGCS2P54868 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
HMGCS2P54868 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
HMGCS2P54868 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC21.52■■□□□ 1.04
HMGCS2P54868 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
HMGCS2P54868 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
HMGCS2P54868 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC21.52■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms