Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC19.26■□□□□ 0.67
NEK3P51956 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
NEK3P51956 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC19.26■□□□□ 0.67
NEK3P51956 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
NEK3P51956 TERF1P1-201ENST00000311003 1181 ntBASIC19.26■□□□□ 0.67
NEK3P51956 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
NEK3P51956 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC19.26■□□□□ 0.67
NEK3P51956 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC19.26■□□□□ 0.67
NEK3P51956 MIR1224-201ENST00000408193 85 ntBASIC19.26■□□□□ 0.67
NEK3P51956 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC19.26■□□□□ 0.67
NEK3P51956 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
NEK3P51956 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC19.26■□□□□ 0.67
NEK3P51956 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
NEK3P51956 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC19.26■□□□□ 0.67
NEK3P51956 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
NEK3P51956 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
NEK3P51956 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
NEK3P51956 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC19.26■□□□□ 0.67
NEK3P51956 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC19.26■□□□□ 0.67
NEK3P51956 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
NEK3P51956 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC19.26■□□□□ 0.67
NEK3P51956 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
NEK3P51956 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
NEK3P51956 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
NEK3P51956 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
NEK3P51956 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC19.25■□□□□ 0.67
NEK3P51956 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC19.25■□□□□ 0.67
NEK3P51956 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC19.25■□□□□ 0.67
NEK3P51956 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
NEK3P51956 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC19.25■□□□□ 0.67
NEK3P51956 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
NEK3P51956 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NEK3P51956 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
NEK3P51956 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NEK3P51956 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NEK3P51956 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NEK3P51956 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NEK3P51956 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NEK3P51956 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
NEK3P51956 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
NEK3P51956 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
NEK3P51956 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC19.25■□□□□ 0.67
NEK3P51956 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NEK3P51956 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NEK3P51956 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC19.25■□□□□ 0.67
NEK3P51956 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
NEK3P51956 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
NEK3P51956 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
NEK3P51956 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC19.25■□□□□ 0.67
NEK3P51956 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
NEK3P51956 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC19.25■□□□□ 0.67
NEK3P51956 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
NEK3P51956 KRT8P11-201ENST00000409686 1436 ntBASIC19.25■□□□□ 0.67
NEK3P51956 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
NEK3P51956 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
NEK3P51956 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC19.24■□□□□ 0.67
NEK3P51956 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
NEK3P51956 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
NEK3P51956 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC19.24■□□□□ 0.67
NEK3P51956 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
NEK3P51956 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC19.24■□□□□ 0.67
NEK3P51956 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
NEK3P51956 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
NEK3P51956 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC19.24■□□□□ 0.67
NEK3P51956 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
NEK3P51956 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
NEK3P51956 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
NEK3P51956 INGX-201ENST00000359239 846 ntBASIC19.24■□□□□ 0.67
NEK3P51956 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
NEK3P51956 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC19.24■□□□□ 0.67
NEK3P51956 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
NEK3P51956 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC19.24■□□□□ 0.67
NEK3P51956 KRT18P57-201ENST00000443599 1254 ntBASIC19.24■□□□□ 0.67
NEK3P51956 CA15P1-201ENST00000481698 905 ntBASIC19.24■□□□□ 0.67
NEK3P51956 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
NEK3P51956 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC19.24■□□□□ 0.67
NEK3P51956 FAM87A-204ENST00000613235 858 ntBASIC19.24■□□□□ 0.67
NEK3P51956 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
NEK3P51956 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
NEK3P51956 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
NEK3P51956 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
NEK3P51956 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
NEK3P51956 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
NEK3P51956 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
NEK3P51956 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC19.24■□□□□ 0.67
NEK3P51956 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
NEK3P51956 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
NEK3P51956 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
NEK3P51956 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
NEK3P51956 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
NEK3P51956 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC19.23■□□□□ 0.67
NEK3P51956 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC19.23■□□□□ 0.67
NEK3P51956 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
NEK3P51956 AL512353.2-201ENST00000448759 1962 ntBASIC19.23■□□□□ 0.67
NEK3P51956 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
NEK3P51956 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
NEK3P51956 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
NEK3P51956 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
NEK3P51956 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC19.23■□□□□ 0.67
NEK3P51956 LIN28AP1-201ENST00000429574 405 ntBASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms