Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC20.99■□□□□ 0.95
HTTP42858 FAM8A3P-201ENST00000427218 844 ntBASIC20.99■□□□□ 0.95
HTTP42858 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
HTTP42858 GAS2L1P1-201ENST00000420145 1480 ntBASIC20.99■□□□□ 0.95
HTTP42858 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC20.99■□□□□ 0.95
HTTP42858 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
HTTP42858 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
HTTP42858 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
HTTP42858 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
HTTP42858 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HTTP42858 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC20.99■□□□□ 0.95
HTTP42858 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
HTTP42858 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
HTTP42858 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC20.98■□□□□ 0.95
HTTP42858 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
HTTP42858 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HTTP42858 DNAJB3-201ENST00000446806 729 ntBASIC20.98■□□□□ 0.95
HTTP42858 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HTTP42858 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HTTP42858 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HTTP42858 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC20.98■□□□□ 0.95
HTTP42858 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HTTP42858 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC20.98■□□□□ 0.95
HTTP42858 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC20.98■□□□□ 0.95
HTTP42858 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC20.98■□□□□ 0.95
HTTP42858 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
HTTP42858 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HTTP42858 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC20.98■□□□□ 0.95
HTTP42858 METTL21AP1-201ENST00000438852 635 ntBASIC20.98■□□□□ 0.95
HTTP42858 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC20.98■□□□□ 0.95
HTTP42858 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HTTP42858 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HTTP42858 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC20.98■□□□□ 0.95
HTTP42858 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HTTP42858 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HTTP42858 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC20.98■□□□□ 0.95
HTTP42858 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC20.98■□□□□ 0.95
HTTP42858 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HTTP42858 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HTTP42858 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
HTTP42858 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HTTP42858 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HTTP42858 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HTTP42858 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC20.97■□□□□ 0.95
HTTP42858 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
HTTP42858 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
HTTP42858 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
HTTP42858 HS6ST1P1-201ENST00000481504 1234 ntBASIC20.97■□□□□ 0.95
HTTP42858 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC20.97■□□□□ 0.95
HTTP42858 AC025062.2-201ENST00000605477 670 ntBASIC20.97■□□□□ 0.95
HTTP42858 GOLGA2P11-201ENST00000562660 1621 ntBASIC20.97■□□□□ 0.95
HTTP42858 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
HTTP42858 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HTTP42858 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
HTTP42858 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC20.97■□□□□ 0.95
HTTP42858 HLA-J-202ENST00000469281 1241 ntBASIC20.97■□□□□ 0.95
HTTP42858 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC20.97■□□□□ 0.95
HTTP42858 GZMM-202ENST00000592501 941 ntTSL 3 BASIC20.97■□□□□ 0.95
HTTP42858 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
HTTP42858 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
HTTP42858 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HTTP42858 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HTTP42858 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
HTTP42858 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
HTTP42858 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
HTTP42858 POM121L3P-201ENST00000419331 1163 ntBASIC20.96■□□□□ 0.95
HTTP42858 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC20.96■□□□□ 0.95
HTTP42858 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HTTP42858 AL162377.1-201ENST00000618844 1793 ntBASIC20.96■□□□□ 0.95
HTTP42858 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HTTP42858 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC20.96■□□□□ 0.95
HTTP42858 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
HTTP42858 AC211486.1-202ENST00000416371 468 ntBASIC20.96■□□□□ 0.95
HTTP42858 ATP6V0CP3-201ENST00000417255 467 ntBASIC20.96■□□□□ 0.95
HTTP42858 AC211476.1-201ENST00000503899 468 ntBASIC20.96■□□□□ 0.95
HTTP42858 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
HTTP42858 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
HTTP42858 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
HTTP42858 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HTTP42858 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
HTTP42858 KRT18P3-201ENST00000451602 1288 ntBASIC20.95■□□□□ 0.95
HTTP42858 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC20.95■□□□□ 0.95
HTTP42858 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
HTTP42858 AC009533.2-201ENST00000543664 586 ntBASIC20.95■□□□□ 0.94
HTTP42858 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC20.95■□□□□ 0.94
HTTP42858 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC20.95■□□□□ 0.94
HTTP42858 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
HTTP42858 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HTTP42858 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
HTTP42858 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
HTTP42858 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
HTTP42858 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HTTP42858 RBM17P3-201ENST00000417687 1192 ntBASIC20.95■□□□□ 0.94
HTTP42858 LHX6-205ENST00000464484 666 ntTSL 2 BASIC20.95■□□□□ 0.94
HTTP42858 YBX1P5-201ENST00000509441 847 ntBASIC20.95■□□□□ 0.94
HTTP42858 KRT8P7-201ENST00000533003 1432 ntBASIC20.95■□□□□ 0.94
HTTP42858 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
HTTP42858 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HTTP42858 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HTTP42858 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms