Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
VPS4BO75351 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
VPS4BO75351 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC18.33■□□□□ 0.53
VPS4BO75351 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
VPS4BO75351 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VPS4BO75351 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
VPS4BO75351 CRAT-202ENST00000393384 973 ntTSL 2 BASIC18.33■□□□□ 0.52
VPS4BO75351 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VPS4BO75351 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC18.33■□□□□ 0.52
VPS4BO75351 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC18.33■□□□□ 0.52
VPS4BO75351 NME3-204ENST00000563498 920 ntTSL 2 BASIC18.33■□□□□ 0.52
VPS4BO75351 AL160286.2-201ENST00000567150 934 ntBASIC18.33■□□□□ 0.52
VPS4BO75351 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC18.33■□□□□ 0.52
VPS4BO75351 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC18.33■□□□□ 0.52
VPS4BO75351 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC18.33■□□□□ 0.52
VPS4BO75351 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC18.33■□□□□ 0.52
VPS4BO75351 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.52
VPS4BO75351 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC18.33■□□□□ 0.52
VPS4BO75351 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
VPS4BO75351 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC18.33■□□□□ 0.52
VPS4BO75351 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VPS4BO75351 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VPS4BO75351 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
VPS4BO75351 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VPS4BO75351 AC073592.3-201ENST00000625118 1834 ntBASIC18.33■□□□□ 0.52
VPS4BO75351 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
VPS4BO75351 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC18.32■□□□□ 0.52
VPS4BO75351 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
VPS4BO75351 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
VPS4BO75351 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS4BO75351 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
VPS4BO75351 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS4BO75351 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS4BO75351 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC18.32■□□□□ 0.52
VPS4BO75351 HTR7P1-201ENST00000538670 1336 ntBASIC18.32■□□□□ 0.52
VPS4BO75351 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
VPS4BO75351 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS4BO75351 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC18.32■□□□□ 0.52
VPS4BO75351 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS4BO75351 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC18.32■□□□□ 0.52
VPS4BO75351 AF186192.3-201ENST00000583427 947 ntBASIC18.32■□□□□ 0.52
VPS4BO75351 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS4BO75351 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC18.32■□□□□ 0.52
VPS4BO75351 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC18.32■□□□□ 0.52
VPS4BO75351 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS4BO75351 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC18.32■□□□□ 0.52
VPS4BO75351 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
VPS4BO75351 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS4BO75351 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS4BO75351 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS4BO75351 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
VPS4BO75351 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
VPS4BO75351 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS4BO75351 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC18.32■□□□□ 0.52
VPS4BO75351 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
VPS4BO75351 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
VPS4BO75351 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC18.32■□□□□ 0.52
VPS4BO75351 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC18.32■□□□□ 0.52
VPS4BO75351 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC18.32■□□□□ 0.52
VPS4BO75351 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
VPS4BO75351 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VPS4BO75351 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS4BO75351 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC18.31■□□□□ 0.52
VPS4BO75351 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS4BO75351 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VPS4BO75351 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC18.31■□□□□ 0.52
VPS4BO75351 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS4BO75351 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VPS4BO75351 GOLGA6L5P-202ENST00000515341 1828 ntBASIC18.31■□□□□ 0.52
VPS4BO75351 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS4BO75351 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS4BO75351 AC005521.1-201ENST00000393351 872 ntBASIC18.31■□□□□ 0.52
VPS4BO75351 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS4BO75351 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC18.31■□□□□ 0.52
VPS4BO75351 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC18.31■□□□□ 0.52
VPS4BO75351 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VPS4BO75351 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC18.31■□□□□ 0.52
VPS4BO75351 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC18.31■□□□□ 0.52
VPS4BO75351 P4HB-223ENST00000576390 439 ntTSL 4 BASIC18.31■□□□□ 0.52
VPS4BO75351 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
VPS4BO75351 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC18.31■□□□□ 0.52
VPS4BO75351 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC18.31■□□□□ 0.52
VPS4BO75351 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
VPS4BO75351 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC18.31■□□□□ 0.52
VPS4BO75351 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS4BO75351 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC18.31■□□□□ 0.52
VPS4BO75351 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC18.31■□□□□ 0.52
VPS4BO75351 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS4BO75351 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC18.31■□□□□ 0.52
VPS4BO75351 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC18.31■□□□□ 0.52
VPS4BO75351 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS4BO75351 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC18.31■□□□□ 0.52
VPS4BO75351 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VPS4BO75351 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC18.31■□□□□ 0.52
VPS4BO75351 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
VPS4BO75351 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS4BO75351 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS4BO75351 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS4BO75351 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VPS4BO75351 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms