Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
LMX1BO60663 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
LMX1BO60663 AC126763.1-201ENST00000552015 2118 ntBASIC16.44■□□□□ 0.22
LMX1BO60663 AP000525.1-201ENST00000608286 694 ntBASIC16.44■□□□□ 0.22
LMX1BO60663 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC16.44■□□□□ 0.22
LMX1BO60663 COBL-210ENST00000632460 1941 ntTSL 5 BASIC16.44■□□□□ 0.22
LMX1BO60663 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
LMX1BO60663 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
LMX1BO60663 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
LMX1BO60663 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
LMX1BO60663 KRT8P41-201ENST00000533985 1514 ntBASIC16.44■□□□□ 0.22
LMX1BO60663 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
LMX1BO60663 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
LMX1BO60663 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC16.44■□□□□ 0.22
LMX1BO60663 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
LMX1BO60663 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
LMX1BO60663 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC16.44■□□□□ 0.22
LMX1BO60663 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC16.44■□□□□ 0.22
LMX1BO60663 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC16.43■□□□□ 0.22
LMX1BO60663 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC16.43■□□□□ 0.22
LMX1BO60663 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LMX1BO60663 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LMX1BO60663 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LMX1BO60663 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
LMX1BO60663 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LMX1BO60663 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
LMX1BO60663 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC16.43■□□□□ 0.22
LMX1BO60663 AC079598.2-202ENST00000546624 1451 ntBASIC16.43■□□□□ 0.22
LMX1BO60663 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC16.43■□□□□ 0.22
LMX1BO60663 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC16.43■□□□□ 0.22
LMX1BO60663 SNAI3-AS1-205ENST00000568633 2096 ntBASIC16.43■□□□□ 0.22
LMX1BO60663 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
LMX1BO60663 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LMX1BO60663 AC138932.1-201ENST00000534164 6830 ntBASIC16.43■□□□□ 0.22
LMX1BO60663 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
LMX1BO60663 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC16.43■□□□□ 0.22
LMX1BO60663 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC16.43■□□□□ 0.22
LMX1BO60663 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
LMX1BO60663 TPM1-226ENST00000560959 925 ntTSL 2 BASIC16.43■□□□□ 0.22
LMX1BO60663 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC16.43■□□□□ 0.22
LMX1BO60663 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC16.43■□□□□ 0.22
LMX1BO60663 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC16.43■□□□□ 0.22
LMX1BO60663 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC16.43■□□□□ 0.22
LMX1BO60663 REXO1L10P-201ENST00000615707 1290 ntBASIC16.43■□□□□ 0.22
LMX1BO60663 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LMX1BO60663 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
LMX1BO60663 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
LMX1BO60663 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
LMX1BO60663 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
LMX1BO60663 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LMX1BO60663 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
LMX1BO60663 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
LMX1BO60663 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC16.43■□□□□ 0.22
LMX1BO60663 PXK-206ENST00000463280 2825 ntTSL 2 BASIC16.43■□□□□ 0.22
LMX1BO60663 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LMX1BO60663 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
LMX1BO60663 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LMX1BO60663 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC16.43■□□□□ 0.22
LMX1BO60663 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LMX1BO60663 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LMX1BO60663 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
LMX1BO60663 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC16.42■□□□□ 0.22
LMX1BO60663 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
LMX1BO60663 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
LMX1BO60663 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
LMX1BO60663 AL354751.1-201ENST00000412768 1863 ntBASIC16.42■□□□□ 0.22
LMX1BO60663 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC16.42■□□□□ 0.22
LMX1BO60663 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
LMX1BO60663 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LMX1BO60663 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
LMX1BO60663 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
LMX1BO60663 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LMX1BO60663 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.22
LMX1BO60663 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
LMX1BO60663 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LMX1BO60663 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC16.42■□□□□ 0.22
LMX1BO60663 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC16.42■□□□□ 0.22
LMX1BO60663 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC16.42■□□□□ 0.22
LMX1BO60663 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC16.42■□□□□ 0.22
LMX1BO60663 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC16.42■□□□□ 0.22
LMX1BO60663 NAPSB-206ENST00000562112 1266 ntBASIC16.42■□□□□ 0.22
LMX1BO60663 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC16.42■□□□□ 0.22
LMX1BO60663 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC16.42■□□□□ 0.22
LMX1BO60663 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC16.42■□□□□ 0.22
LMX1BO60663 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC16.42■□□□□ 0.22
LMX1BO60663 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
LMX1BO60663 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
LMX1BO60663 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LMX1BO60663 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
LMX1BO60663 KRT18P22-201ENST00000402024 1347 ntBASIC16.42■□□□□ 0.22
LMX1BO60663 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
LMX1BO60663 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC16.42■□□□□ 0.22
LMX1BO60663 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
LMX1BO60663 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC16.42■□□□□ 0.22
LMX1BO60663 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
LMX1BO60663 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LMX1BO60663 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LMX1BO60663 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
LMX1BO60663 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
LMX1BO60663 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms