Protein–RNA interactions for Protein: O43679

LDB2, LIM domain-binding protein 2, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB2O43679 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
LDB2O43679 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
LDB2O43679 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC18.68■□□□□ 0.58
LDB2O43679 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LDB2O43679 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LDB2O43679 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC18.68■□□□□ 0.58
LDB2O43679 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LDB2O43679 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC18.68■□□□□ 0.58
LDB2O43679 NEFHP1-201ENST00000412845 2629 ntBASIC18.68■□□□□ 0.58
LDB2O43679 AC036111.1-201ENST00000533973 1582 ntBASIC18.68■□□□□ 0.58
LDB2O43679 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
LDB2O43679 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC18.68■□□□□ 0.58
LDB2O43679 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LDB2O43679 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LDB2O43679 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
LDB2O43679 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
LDB2O43679 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC18.67■□□□□ 0.58
LDB2O43679 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC18.67■□□□□ 0.58
LDB2O43679 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LDB2O43679 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LDB2O43679 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LDB2O43679 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LDB2O43679 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LDB2O43679 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC18.67■□□□□ 0.58
LDB2O43679 ELP6-205ENST00000439305 880 ntTSL 2 BASIC18.67■□□□□ 0.58
LDB2O43679 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LDB2O43679 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC18.67■□□□□ 0.58
LDB2O43679 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LDB2O43679 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
LDB2O43679 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC18.67■□□□□ 0.58
LDB2O43679 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LDB2O43679 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
LDB2O43679 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LDB2O43679 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC18.67■□□□□ 0.58
LDB2O43679 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LDB2O43679 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
LDB2O43679 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
LDB2O43679 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LDB2O43679 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC18.66■□□□□ 0.58
LDB2O43679 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC18.66■□□□□ 0.58
LDB2O43679 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LDB2O43679 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
LDB2O43679 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC18.66■□□□□ 0.58
LDB2O43679 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
LDB2O43679 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC18.66■□□□□ 0.58
LDB2O43679 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
LDB2O43679 CR769767.2-201ENST00000622735 460 ntBASIC18.66■□□□□ 0.58
LDB2O43679 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
LDB2O43679 MYC-208ENST00000641036 567 ntBASIC18.66■□□□□ 0.58
LDB2O43679 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC18.66■□□□□ 0.58
LDB2O43679 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LDB2O43679 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC18.66■□□□□ 0.58
LDB2O43679 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
LDB2O43679 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LDB2O43679 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC18.66■□□□□ 0.58
LDB2O43679 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LDB2O43679 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LDB2O43679 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC18.66■□□□□ 0.58
LDB2O43679 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC18.66■□□□□ 0.58
LDB2O43679 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
LDB2O43679 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
LDB2O43679 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LDB2O43679 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LDB2O43679 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LDB2O43679 AC034236.2-201ENST00000606662 1610 ntBASIC18.65■□□□□ 0.58
LDB2O43679 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC18.65■□□□□ 0.58
LDB2O43679 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC18.65■□□□□ 0.58
LDB2O43679 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC18.65■□□□□ 0.58
LDB2O43679 ECEL1P3-201ENST00000427961 737 ntBASIC18.65■□□□□ 0.58
LDB2O43679 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC18.65■□□□□ 0.58
LDB2O43679 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LDB2O43679 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC18.65■□□□□ 0.58
LDB2O43679 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC18.65■□□□□ 0.58
LDB2O43679 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC18.65■□□□□ 0.58
LDB2O43679 WWOX-216ENST00000569818 525 ntBASIC18.65■□□□□ 0.58
LDB2O43679 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LDB2O43679 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC18.65■□□□□ 0.58
LDB2O43679 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LDB2O43679 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LDB2O43679 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
LDB2O43679 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC18.65■□□□□ 0.58
LDB2O43679 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LDB2O43679 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LDB2O43679 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
LDB2O43679 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
LDB2O43679 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
LDB2O43679 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC18.64■□□□□ 0.58
LDB2O43679 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC18.64■□□□□ 0.58
LDB2O43679 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC18.64■□□□□ 0.58
LDB2O43679 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC18.64■□□□□ 0.58
LDB2O43679 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LDB2O43679 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LDB2O43679 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
LDB2O43679 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LDB2O43679 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LDB2O43679 ILF2-202ENST00000368681 726 ntTSL 2 BASIC18.64■□□□□ 0.57
LDB2O43679 CRAT-202ENST00000393384 973 ntTSL 2 BASIC18.64■□□□□ 0.57
LDB2O43679 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
LDB2O43679 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LDB2O43679 GXYLT1P6-201ENST00000456472 1187 ntBASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms