Protein–RNA interactions for Protein: Q9Y239

NOD1, Nucleotide-binding oligomerization domain-containing protein 1, humanhuman

Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOD1Q9Y239 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NOD1Q9Y239 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NOD1Q9Y239 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
NOD1Q9Y239 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
NOD1Q9Y239 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
NOD1Q9Y239 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC20.6■□□□□ 0.89
NOD1Q9Y239 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NOD1Q9Y239 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NOD1Q9Y239 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
NOD1Q9Y239 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC20.6■□□□□ 0.89
NOD1Q9Y239 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC20.6■□□□□ 0.89
NOD1Q9Y239 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
NOD1Q9Y239 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC20.6■□□□□ 0.89
NOD1Q9Y239 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC20.6■□□□□ 0.89
NOD1Q9Y239 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC20.6■□□□□ 0.89
NOD1Q9Y239 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
NOD1Q9Y239 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NOD1Q9Y239 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
NOD1Q9Y239 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NOD1Q9Y239 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC20.6■□□□□ 0.89
NOD1Q9Y239 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
NOD1Q9Y239 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
NOD1Q9Y239 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
NOD1Q9Y239 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
NOD1Q9Y239 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NOD1Q9Y239 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
NOD1Q9Y239 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
NOD1Q9Y239 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NOD1Q9Y239 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NOD1Q9Y239 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
NOD1Q9Y239 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NOD1Q9Y239 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NOD1Q9Y239 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
NOD1Q9Y239 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
NOD1Q9Y239 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
NOD1Q9Y239 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NOD1Q9Y239 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC20.59■□□□□ 0.89
NOD1Q9Y239 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
NOD1Q9Y239 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC20.59■□□□□ 0.89
NOD1Q9Y239 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
NOD1Q9Y239 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
NOD1Q9Y239 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC20.59■□□□□ 0.89
NOD1Q9Y239 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
NOD1Q9Y239 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC20.59■□□□□ 0.89
NOD1Q9Y239 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
NOD1Q9Y239 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
NOD1Q9Y239 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
NOD1Q9Y239 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
NOD1Q9Y239 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
NOD1Q9Y239 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC20.58■□□□□ 0.89
NOD1Q9Y239 TEX21P-204ENST00000641479 1693 ntBASIC20.58■□□□□ 0.89
NOD1Q9Y239 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC20.58■□□□□ 0.89
NOD1Q9Y239 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
NOD1Q9Y239 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
NOD1Q9Y239 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC20.58■□□□□ 0.89
NOD1Q9Y239 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
NOD1Q9Y239 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
NOD1Q9Y239 MIR564-202ENST00000385049 94 ntBASIC20.58■□□□□ 0.89
NOD1Q9Y239 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC20.58■□□□□ 0.89
NOD1Q9Y239 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC20.58■□□□□ 0.89
NOD1Q9Y239 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC20.58■□□□□ 0.89
NOD1Q9Y239 KRT18P31-201ENST00000506277 1292 ntBASIC20.58■□□□□ 0.89
NOD1Q9Y239 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC20.58■□□□□ 0.89
NOD1Q9Y239 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
NOD1Q9Y239 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC20.58■□□□□ 0.89
NOD1Q9Y239 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
NOD1Q9Y239 AC138894.3-201ENST00000603787 634 ntBASIC20.58■□□□□ 0.89
NOD1Q9Y239 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
NOD1Q9Y239 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC20.58■□□□□ 0.89
NOD1Q9Y239 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
NOD1Q9Y239 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
NOD1Q9Y239 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
NOD1Q9Y239 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
NOD1Q9Y239 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC20.58■□□□□ 0.88
NOD1Q9Y239 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
NOD1Q9Y239 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC20.57■□□□□ 0.88
NOD1Q9Y239 PBK-203ENST00000522944 1499 ntTSL 2 BASIC20.57■□□□□ 0.88
NOD1Q9Y239 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
NOD1Q9Y239 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC20.57■□□□□ 0.88
NOD1Q9Y239 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
NOD1Q9Y239 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC20.57■□□□□ 0.88
NOD1Q9Y239 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NOD1Q9Y239 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NOD1Q9Y239 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
NOD1Q9Y239 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NOD1Q9Y239 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
NOD1Q9Y239 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
NOD1Q9Y239 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC20.57■□□□□ 0.88
NOD1Q9Y239 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC20.57■□□□□ 0.88
NOD1Q9Y239 PVRIG2P-201ENST00000435460 978 ntBASIC20.57■□□□□ 0.88
NOD1Q9Y239 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC20.57■□□□□ 0.88
NOD1Q9Y239 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC20.57■□□□□ 0.88
NOD1Q9Y239 AC074051.2-201ENST00000565115 352 ntBASIC20.57■□□□□ 0.88
NOD1Q9Y239 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC20.57■□□□□ 0.88
NOD1Q9Y239 AL031008.1-201ENST00000619963 541 ntBASIC20.57■□□□□ 0.88
NOD1Q9Y239 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC20.57■□□□□ 0.88
NOD1Q9Y239 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NOD1Q9Y239 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC20.57■□□□□ 0.88
NOD1Q9Y239 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NOD1Q9Y239 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms