Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CHMP1AQ9HD42 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
CHMP1AQ9HD42 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CHMP1AQ9HD42 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CHMP1AQ9HD42 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
CHMP1AQ9HD42 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC16.11■□□□□ 0.17
CHMP1AQ9HD42 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CHMP1AQ9HD42 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CHMP1AQ9HD42 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
CHMP1AQ9HD42 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC16.11■□□□□ 0.17
CHMP1AQ9HD42 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CHMP1AQ9HD42 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CHMP1AQ9HD42 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC16.11■□□□□ 0.17
CHMP1AQ9HD42 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CHMP1AQ9HD42 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
CHMP1AQ9HD42 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC16.11■□□□□ 0.17
CHMP1AQ9HD42 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CHMP1AQ9HD42 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
CHMP1AQ9HD42 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC16.11■□□□□ 0.17
CHMP1AQ9HD42 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CHMP1AQ9HD42 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CHMP1AQ9HD42 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CHMP1AQ9HD42 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
CHMP1AQ9HD42 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC16.11■□□□□ 0.17
CHMP1AQ9HD42 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC16.11■□□□□ 0.17
CHMP1AQ9HD42 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC16.11■□□□□ 0.17
CHMP1AQ9HD42 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC16.11■□□□□ 0.17
CHMP1AQ9HD42 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC16.11■□□□□ 0.17
CHMP1AQ9HD42 AC060766.5-201ENST00000590539 871 ntBASIC16.11■□□□□ 0.17
CHMP1AQ9HD42 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.17
CHMP1AQ9HD42 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CHMP1AQ9HD42 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC16.11■□□□□ 0.17
CHMP1AQ9HD42 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC16.11■□□□□ 0.17
CHMP1AQ9HD42 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CHMP1AQ9HD42 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CHMP1AQ9HD42 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC16.11■□□□□ 0.17
CHMP1AQ9HD42 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC16.11■□□□□ 0.17
CHMP1AQ9HD42 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CHMP1AQ9HD42 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC16.11■□□□□ 0.17
CHMP1AQ9HD42 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
CHMP1AQ9HD42 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
CHMP1AQ9HD42 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CHMP1AQ9HD42 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
CHMP1AQ9HD42 AL031598.1-201ENST00000561511 1773 ntBASIC16.1■□□□□ 0.17
CHMP1AQ9HD42 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC16.1■□□□□ 0.17
CHMP1AQ9HD42 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
CHMP1AQ9HD42 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC16.1■□□□□ 0.17
CHMP1AQ9HD42 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CHMP1AQ9HD42 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CHMP1AQ9HD42 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CHMP1AQ9HD42 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CHMP1AQ9HD42 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
CHMP1AQ9HD42 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CHMP1AQ9HD42 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC16.1■□□□□ 0.17
CHMP1AQ9HD42 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC16.1■□□□□ 0.17
CHMP1AQ9HD42 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CHMP1AQ9HD42 PPP1R14BP3-201ENST00000509033 445 ntBASIC16.1■□□□□ 0.17
CHMP1AQ9HD42 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CHMP1AQ9HD42 SOX15-203ENST00000570788 1093 ntBASIC16.1■□□□□ 0.17
CHMP1AQ9HD42 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC16.1■□□□□ 0.17
CHMP1AQ9HD42 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CHMP1AQ9HD42 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CHMP1AQ9HD42 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
CHMP1AQ9HD42 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
CHMP1AQ9HD42 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CHMP1AQ9HD42 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
CHMP1AQ9HD42 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
CHMP1AQ9HD42 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CHMP1AQ9HD42 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC16.09■□□□□ 0.17
CHMP1AQ9HD42 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
CHMP1AQ9HD42 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CHMP1AQ9HD42 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
CHMP1AQ9HD42 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CHMP1AQ9HD42 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
CHMP1AQ9HD42 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CHMP1AQ9HD42 AC011270.2-201ENST00000624293 2550 ntBASIC16.09■□□□□ 0.17
CHMP1AQ9HD42 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
CHMP1AQ9HD42 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CHMP1AQ9HD42 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
CHMP1AQ9HD42 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CHMP1AQ9HD42 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC16.09■□□□□ 0.17
CHMP1AQ9HD42 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CHMP1AQ9HD42 Z98044.1-201ENST00000632503 1764 ntBASIC16.09■□□□□ 0.17
CHMP1AQ9HD42 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
CHMP1AQ9HD42 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC16.09■□□□□ 0.17
CHMP1AQ9HD42 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
CHMP1AQ9HD42 TSPY6P-201ENST00000448518 926 ntBASIC16.09■□□□□ 0.17
CHMP1AQ9HD42 KRT18P16-201ENST00000510337 1294 ntBASIC16.09■□□□□ 0.17
CHMP1AQ9HD42 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC16.09■□□□□ 0.17
CHMP1AQ9HD42 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC16.09■□□□□ 0.17
CHMP1AQ9HD42 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC16.09■□□□□ 0.17
CHMP1AQ9HD42 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC16.09■□□□□ 0.17
CHMP1AQ9HD42 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
CHMP1AQ9HD42 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC16.09■□□□□ 0.17
CHMP1AQ9HD42 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC16.09■□□□□ 0.17
CHMP1AQ9HD42 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC16.09■□□□□ 0.17
CHMP1AQ9HD42 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC16.09■□□□□ 0.17
CHMP1AQ9HD42 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CHMP1AQ9HD42 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CHMP1AQ9HD42 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms