Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC18.79■□□□□ 0.6
VPS39Q96JC1 AC073648.6-201ENST00000641589 218 ntBASIC18.79■□□□□ 0.6
VPS39Q96JC1 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC18.79■□□□□ 0.6
VPS39Q96JC1 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS39Q96JC1 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VPS39Q96JC1 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VPS39Q96JC1 AL354751.1-201ENST00000412768 1863 ntBASIC18.79■□□□□ 0.6
VPS39Q96JC1 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
VPS39Q96JC1 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC18.79■□□□□ 0.6
VPS39Q96JC1 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS39Q96JC1 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS39Q96JC1 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS39Q96JC1 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC18.79■□□□□ 0.6
VPS39Q96JC1 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS39Q96JC1 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC18.79■□□□□ 0.6
VPS39Q96JC1 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
VPS39Q96JC1 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS39Q96JC1 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS39Q96JC1 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS39Q96JC1 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VPS39Q96JC1 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS39Q96JC1 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VPS39Q96JC1 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC18.78■□□□□ 0.6
VPS39Q96JC1 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS39Q96JC1 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS39Q96JC1 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC18.78■□□□□ 0.6
VPS39Q96JC1 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS39Q96JC1 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS39Q96JC1 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC18.78■□□□□ 0.6
VPS39Q96JC1 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC18.78■□□□□ 0.6
VPS39Q96JC1 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS39Q96JC1 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS39Q96JC1 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC18.78■□□□□ 0.6
VPS39Q96JC1 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VPS39Q96JC1 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
VPS39Q96JC1 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC18.78■□□□□ 0.6
VPS39Q96JC1 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC18.78■□□□□ 0.6
VPS39Q96JC1 AC073592.3-201ENST00000625118 1834 ntBASIC18.78■□□□□ 0.6
VPS39Q96JC1 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC18.78■□□□□ 0.6
VPS39Q96JC1 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
VPS39Q96JC1 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS39Q96JC1 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS39Q96JC1 MTMR9LP-203ENST00000426597 1545 ntBASIC18.78■□□□□ 0.6
VPS39Q96JC1 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VPS39Q96JC1 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC18.78■□□□□ 0.6
VPS39Q96JC1 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS39Q96JC1 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS39Q96JC1 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS39Q96JC1 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS39Q96JC1 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS39Q96JC1 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
VPS39Q96JC1 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC18.77■□□□□ 0.6
VPS39Q96JC1 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC18.77■□□□□ 0.6
VPS39Q96JC1 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS39Q96JC1 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS39Q96JC1 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS39Q96JC1 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
VPS39Q96JC1 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
VPS39Q96JC1 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC18.77■□□□□ 0.6
VPS39Q96JC1 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
VPS39Q96JC1 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS39Q96JC1 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS39Q96JC1 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
VPS39Q96JC1 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC18.77■□□□□ 0.6
VPS39Q96JC1 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS39Q96JC1 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS39Q96JC1 AL353807.1-201ENST00000427475 662 ntBASIC18.77■□□□□ 0.6
VPS39Q96JC1 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS39Q96JC1 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC18.77■□□□□ 0.6
VPS39Q96JC1 PRSS44-201ENST00000515154 1146 ntBASIC18.77■□□□□ 0.6
VPS39Q96JC1 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
VPS39Q96JC1 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC18.77■□□□□ 0.6
VPS39Q96JC1 AL353708.3-201ENST00000610272 989 ntBASIC18.77■□□□□ 0.6
VPS39Q96JC1 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
VPS39Q96JC1 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC18.77■□□□□ 0.6
VPS39Q96JC1 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS39Q96JC1 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
VPS39Q96JC1 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
VPS39Q96JC1 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC18.77■□□□□ 0.6
VPS39Q96JC1 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC18.77■□□□□ 0.6
VPS39Q96JC1 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
VPS39Q96JC1 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC18.77■□□□□ 0.59
VPS39Q96JC1 MADD-208ENST00000405573 1823 ntTSL 5 BASIC18.77■□□□□ 0.59
VPS39Q96JC1 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VPS39Q96JC1 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC18.76■□□□□ 0.59
VPS39Q96JC1 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC18.76■□□□□ 0.59
VPS39Q96JC1 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VPS39Q96JC1 NFYC-AS1-201ENST00000606277 1687 ntBASIC18.76■□□□□ 0.59
VPS39Q96JC1 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS39Q96JC1 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
VPS39Q96JC1 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
VPS39Q96JC1 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS39Q96JC1 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC18.76■□□□□ 0.59
VPS39Q96JC1 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS39Q96JC1 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VPS39Q96JC1 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS39Q96JC1 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS39Q96JC1 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC18.76■□□□□ 0.59
VPS39Q96JC1 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS39Q96JC1 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 65.9 ms