Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
SHROOM3Q8TF72 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC19.07■□□□□ 0.64
SHROOM3Q8TF72 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SHROOM3Q8TF72 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SHROOM3Q8TF72 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC19.07■□□□□ 0.64
SHROOM3Q8TF72 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC19.07■□□□□ 0.64
SHROOM3Q8TF72 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SHROOM3Q8TF72 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC19.07■□□□□ 0.64
SHROOM3Q8TF72 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC19.07■□□□□ 0.64
SHROOM3Q8TF72 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SHROOM3Q8TF72 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
SHROOM3Q8TF72 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC19.07■□□□□ 0.64
SHROOM3Q8TF72 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SHROOM3Q8TF72 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SHROOM3Q8TF72 AC010653.2-201ENST00000623505 997 ntBASIC19.07■□□□□ 0.64
SHROOM3Q8TF72 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC19.07■□□□□ 0.64
SHROOM3Q8TF72 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SHROOM3Q8TF72 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC19.07■□□□□ 0.64
SHROOM3Q8TF72 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
SHROOM3Q8TF72 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SHROOM3Q8TF72 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
SHROOM3Q8TF72 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC19.07■□□□□ 0.64
SHROOM3Q8TF72 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
SHROOM3Q8TF72 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC19.07■□□□□ 0.64
SHROOM3Q8TF72 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
SHROOM3Q8TF72 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
SHROOM3Q8TF72 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
SHROOM3Q8TF72 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
SHROOM3Q8TF72 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
SHROOM3Q8TF72 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
SHROOM3Q8TF72 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC19.06■□□□□ 0.64
SHROOM3Q8TF72 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SHROOM3Q8TF72 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC19.06■□□□□ 0.64
SHROOM3Q8TF72 TSPY14P-201ENST00000303979 915 ntBASIC19.06■□□□□ 0.64
SHROOM3Q8TF72 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SHROOM3Q8TF72 BUB3-202ENST00000368859 667 ntTSL 3 BASIC19.06■□□□□ 0.64
SHROOM3Q8TF72 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC19.06■□□□□ 0.64
SHROOM3Q8TF72 MCCD1P1-208ENST00000445732 328 ntBASIC19.06■□□□□ 0.64
SHROOM3Q8TF72 DUX4L26-201ENST00000489078 1255 ntBASIC19.06■□□□□ 0.64
SHROOM3Q8TF72 WWOX-216ENST00000569818 525 ntBASIC19.06■□□□□ 0.64
SHROOM3Q8TF72 MIR3180-5-201ENST00000583743 153 ntBASIC19.06■□□□□ 0.64
SHROOM3Q8TF72 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
SHROOM3Q8TF72 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC19.06■□□□□ 0.64
SHROOM3Q8TF72 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SHROOM3Q8TF72 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SHROOM3Q8TF72 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SHROOM3Q8TF72 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC19.06■□□□□ 0.64
SHROOM3Q8TF72 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SHROOM3Q8TF72 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SHROOM3Q8TF72 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC19.06■□□□□ 0.64
SHROOM3Q8TF72 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC19.06■□□□□ 0.64
SHROOM3Q8TF72 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SHROOM3Q8TF72 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SHROOM3Q8TF72 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SHROOM3Q8TF72 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SHROOM3Q8TF72 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
SHROOM3Q8TF72 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC19.06■□□□□ 0.64
SHROOM3Q8TF72 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
SHROOM3Q8TF72 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
SHROOM3Q8TF72 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
SHROOM3Q8TF72 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC19.06■□□□□ 0.64
SHROOM3Q8TF72 UPK3BP1-201ENST00000428678 509 ntBASIC19.06■□□□□ 0.64
SHROOM3Q8TF72 LTBR-211ENST00000543190 785 ntTSL 3 BASIC19.06■□□□□ 0.64
SHROOM3Q8TF72 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
SHROOM3Q8TF72 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SHROOM3Q8TF72 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SHROOM3Q8TF72 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SHROOM3Q8TF72 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
SHROOM3Q8TF72 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
SHROOM3Q8TF72 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
SHROOM3Q8TF72 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC19.06■□□□□ 0.64
SHROOM3Q8TF72 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
SHROOM3Q8TF72 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SHROOM3Q8TF72 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
SHROOM3Q8TF72 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SHROOM3Q8TF72 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SHROOM3Q8TF72 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SHROOM3Q8TF72 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SHROOM3Q8TF72 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SHROOM3Q8TF72 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SHROOM3Q8TF72 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SHROOM3Q8TF72 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC19.05■□□□□ 0.64
SHROOM3Q8TF72 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SHROOM3Q8TF72 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC19.05■□□□□ 0.64
SHROOM3Q8TF72 NAPSB-206ENST00000562112 1266 ntBASIC19.05■□□□□ 0.64
SHROOM3Q8TF72 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SHROOM3Q8TF72 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SHROOM3Q8TF72 AC083906.6-201ENST00000641366 219 ntBASIC19.05■□□□□ 0.64
SHROOM3Q8TF72 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SHROOM3Q8TF72 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
SHROOM3Q8TF72 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
SHROOM3Q8TF72 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC19.05■□□□□ 0.64
SHROOM3Q8TF72 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC19.05■□□□□ 0.64
SHROOM3Q8TF72 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
SHROOM3Q8TF72 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC19.05■□□□□ 0.64
SHROOM3Q8TF72 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
SHROOM3Q8TF72 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
SHROOM3Q8TF72 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC19.05■□□□□ 0.64
SHROOM3Q8TF72 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
SHROOM3Q8TF72 AC034236.2-201ENST00000606662 1610 ntBASIC19.05■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms