Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 BNIP3L-207ENST00000523949 875 ntTSL 311.95□□□□□ -0.54e-8■□□□□ 11.2
DDX55Q8NHQ9 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC25.25■■□□□ 1.631e-7■□□□□ 11.2
DDX55Q8NHQ9 GET4-206ENST00000464468 676 ntTSL 321.32■■□□□ 11e-7■□□□□ 11.2
DDX55Q8NHQ9 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.021e-7■□□□□ 11.2
DDX55Q8NHQ9 BAP1-207ENST00000478368 1234 ntTSL 1 (best)17.46■□□□□ 0.393e-6■□□□□ 11.2
DDX55Q8NHQ9 BAP1-211ENST00000615113 489 ntBASIC16.08■□□□□ 0.163e-6■□□□□ 11.2
DDX55Q8NHQ9 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.036e-7■□□□□ 11.2
DDX55Q8NHQ9 TRMT2A-205ENST00000444256 426 ntTSL 519.4■□□□□ 0.79e-9■□□□□ 11.2
DDX55Q8NHQ9 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.463e-25■□□□□ 11.2
DDX55Q8NHQ9 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.714e-6■□□□□ 11.2
DDX55Q8NHQ9 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.094e-6■□□□□ 11.2
DDX55Q8NHQ9 PPP6R2-202ENST00000359139 4035 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.014e-6■□□□□ 11.2
DDX55Q8NHQ9 AGPAT3-202ENST00000327505 3589 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.194e-6■□□□□ 11.2
DDX55Q8NHQ9 AGPAT3-204ENST00000398061 3595 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.194e-6■□□□□ 11.2
DDX55Q8NHQ9 PPP6R2-209ENST00000612753 4104 ntAPPRIS ALT2 TSL 2 BASIC13.4□□□□□ -0.264e-6■□□□□ 11.2
DDX55Q8NHQ9 AGPAT3-203ENST00000398058 4338 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.374e-6■□□□□ 11.2
DDX55Q8NHQ9 LAMB2-206ENST00000469665 1092 ntTSL 219.96■□□□□ 0.795e-13■□□□□ 11.2
DDX55Q8NHQ9 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.351e-30■□□□□ 11.2
DDX55Q8NHQ9 SERPINF1-208ENST00000572517 672 ntTSL 214.17□□□□□ -0.141e-30■□□□□ 11.2
DDX55Q8NHQ9 TMEM214-202ENST00000321326 2700 ntTSL 221.22■□□□□ 0.994e-7■□□□□ 11.1
DDX55Q8NHQ9 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC20.54■□□□□ 0.884e-7■□□□□ 11.1
DDX55Q8NHQ9 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.624e-7■□□□□ 11.1
DDX55Q8NHQ9 ZFC3H1-201ENST00000378743 7285 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.243e-36■□□□□ 11.1
DDX55Q8NHQ9 ZFC3H1-212ENST00000552994 7597 ntTSL 1 (best)13.45□□□□□ -0.263e-36■□□□□ 11.1
DDX55Q8NHQ9 ZFC3H1-209ENST00000550963 845 ntTSL 56.97□□□□□ -1.293e-36■□□□□ 11.1
DDX55Q8NHQ9 TECR-202ENST00000593637 1043 ntTSL 327.09■■□□□ 1.931e-8■□□□□ 11.1
DDX55Q8NHQ9 TECR-209ENST00000596953 1043 ntTSL 227.09■■□□□ 1.931e-8■□□□□ 11.1
DDX55Q8NHQ9 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91e-8■□□□□ 11.1
DDX55Q8NHQ9 TECR-210ENST00000597607 1164 ntTSL 320.7■□□□□ 0.91e-8■□□□□ 11.1
DDX55Q8NHQ9 TECR-216ENST00000598987 1202 ntTSL 218.85■□□□□ 0.611e-8■□□□□ 11.1
DDX55Q8NHQ9 TECR-220ENST00000600083 1204 ntTSL 2 BASIC18.85■□□□□ 0.611e-8■□□□□ 11.1
DDX55Q8NHQ9 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC18.85■□□□□ 0.611e-8■□□□□ 11.1
DDX55Q8NHQ9 TECR-225ENST00000601652 551 ntTSL 417.5■□□□□ 0.391e-8■□□□□ 11.1
DDX55Q8NHQ9 TECR-211ENST00000598298 868 ntTSL 515.59■□□□□ 0.091e-8■□□□□ 11.1
DDX55Q8NHQ9 TECR-205ENST00000594807 569 ntTSL 415.14■□□□□ 0.011e-8■□□□□ 11.1
DDX55Q8NHQ9 TECR-219ENST00000600076 484 ntTSL 311.87□□□□□ -0.511e-8■□□□□ 11.1
DDX55Q8NHQ9 TECR-212ENST00000598333 822 ntTSL 311.75□□□□□ -0.531e-8■□□□□ 11.1
DDX55Q8NHQ9 INO80E-205ENST00000562441 1412 ntTSL 221.63■■□□□ 1.051e-7■□□□□ 11.1
DDX55Q8NHQ9 INO80E-211ENST00000567987 1926 ntTSL 1 (best)21.58■■□□□ 1.041e-7■□□□□ 11.1
DDX55Q8NHQ9 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC21.56■■□□□ 1.041e-7■□□□□ 11.1
DDX55Q8NHQ9 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.911e-7■□□□□ 11.1
DDX55Q8NHQ9 INO80E-210ENST00000567705 880 ntTSL 3 BASIC20.15■□□□□ 0.821e-7■□□□□ 11.1
DDX55Q8NHQ9 INO80E-203ENST00000540562 3064 ntTSL 214.64□□□□□ -0.071e-7■□□□□ 11.1
DDX55Q8NHQ9 INO80E-213ENST00000569957 4469 ntTSL 213.61□□□□□ -0.231e-7■□□□□ 11.1
DDX55Q8NHQ9 ACADVL-232ENST00000583074 410 ntTSL 522.19■■□□□ 1.145e-9■□□□□ 11.1
DDX55Q8NHQ9 ACADVL-239ENST00000585203 947 ntTSL 518.59■□□□□ 0.575e-9■□□□□ 11.1
DDX55Q8NHQ9 SGTA-205ENST00000591984 882 ntTSL 214.05□□□□□ -0.161e-9■□□□□ 11.1
DDX55Q8NHQ9 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC20.91■□□□□ 0.948e-8■□□□□ 11.1
DDX55Q8NHQ9 BAX-210ENST00000513217 869 ntTSL 217.59■□□□□ 0.418e-8■□□□□ 11.1
DDX55Q8NHQ9 LMO7-201ENST00000321797 5647 ntTSL 5 BASIC10.96□□□□□ -0.657e-7■□□□□ 11.1
DDX55Q8NHQ9 LMO7-227ENST00000605961 2039 nt9.34□□□□□ -0.917e-7■□□□□ 11.1
DDX55Q8NHQ9 LMO7-207ENST00000465261 5580 ntTSL 1 (best) BASIC8.72□□□□□ -1.017e-7■□□□□ 11.1
DDX55Q8NHQ9 LMO7-203ENST00000357063 8237 ntAPPRIS ALT2 TSL 5 BASIC8.53□□□□□ -1.047e-7■□□□□ 11.1
DDX55Q8NHQ9 LMO7-202ENST00000341547 7237 ntAPPRIS P3 TSL 1 (best) BASIC8.37□□□□□ -1.077e-7■□□□□ 11.1
DDX55Q8NHQ9 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC18.91■□□□□ 0.624e-8■□□□□ 11.1
DDX55Q8NHQ9 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC17.57■□□□□ 0.44e-8■□□□□ 11.1
DDX55Q8NHQ9 OXA1L-212ENST00000604262 1571 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.314e-8■□□□□ 11.1
DDX55Q8NHQ9 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC16.81■□□□□ 0.284e-8■□□□□ 11.1
DDX55Q8NHQ9 OXA1L-209ENST00000495424 1679 ntTSL 214.65□□□□□ -0.064e-8■□□□□ 11.1
DDX55Q8NHQ9 OXA1L-207ENST00000481218 1596 ntTSL 59.92□□□□□ -0.824e-8■□□□□ 11.1
DDX55Q8NHQ9 OXA1L-213ENST00000612549 2971 ntTSL 1 (best) BASIC9.3□□□□□ -0.924e-8■□□□□ 11.1
DDX55Q8NHQ9 RPS6KB2-210ENST00000530623 569 ntTSL 427.2■■□□□ 1.944e-6■□□□□ 11.1
DDX55Q8NHQ9 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.374e-6■□□□□ 11.1
DDX55Q8NHQ9 RPS6KB2-203ENST00000524814 550 ntTSL 323.08■■□□□ 1.294e-6■□□□□ 11.1
DDX55Q8NHQ9 RPS6KB2-209ENST00000528964 1806 ntTSL 523.03■■□□□ 1.284e-6■□□□□ 11.1
DDX55Q8NHQ9 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.214e-6■□□□□ 11.1
DDX55Q8NHQ9 RPS6KB2-212ENST00000556575 850 ntTSL 520.88■□□□□ 0.934e-6■□□□□ 11.1
DDX55Q8NHQ9 RPS6KB2-204ENST00000524934 466 ntTSL 319.45■□□□□ 0.74e-6■□□□□ 11.1
DDX55Q8NHQ9 RPS6KB2-202ENST00000420069 461 ntTSL 319.27■□□□□ 0.684e-6■□□□□ 11.1
DDX55Q8NHQ9 RPS6KB2-205ENST00000525088 5528 ntTSL 216.15■□□□□ 0.184e-6■□□□□ 11.1
DDX55Q8NHQ9 AC022384.1-202ENST00000450534 2831 ntAPPRIS ALT2 TSL 2 BASIC12.6□□□□□ -0.394e-6■□□□□ 11.1
DDX55Q8NHQ9 AC022384.1-201ENST00000437082 2270 ntAPPRIS P5 TSL 212.59□□□□□ -0.394e-6■□□□□ 11.1
DDX55Q8NHQ9 TATDN2-203ENST00000448281 4484 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.694e-6■□□□□ 11.1
DDX55Q8NHQ9 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.371e-6■□□□□ 11.1
DDX55Q8NHQ9 APOA2-208ENST00000481413 927 ntTSL 219.08■□□□□ 0.641e-89■□□□□ 11.1
DDX55Q8NHQ9 APOA2-204ENST00000464492 530 ntTSL 3 BASIC18.24■□□□□ 0.511e-89■□□□□ 11.1
DDX55Q8NHQ9 APOA2-209ENST00000481511 655 ntTSL 515.64■□□□□ 0.091e-89■□□□□ 11.1
DDX55Q8NHQ9 APOA2-203ENST00000463812 401 ntTSL 2 BASIC11.62□□□□□ -0.551e-89■□□□□ 11.1
DDX55Q8NHQ9 APOA2-202ENST00000463273 469 ntTSL 1 (best)11.15□□□□□ -0.621e-89■□□□□ 11.1
DDX55Q8NHQ9 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.521e-89■□□□□ 11.1
DDX55Q8NHQ9 APOA2-207ENST00000470459 416 ntTSL 5 BASIC5.42□□□□□ -1.541e-89■□□□□ 11.1
DDX55Q8NHQ9 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC4.4□□□□□ -1.711e-89■□□□□ 11.1
DDX55Q8NHQ9 APOA2-205ENST00000468465 421 ntTSL 2 BASIC3.32□□□□□ -1.881e-89■□□□□ 11.1
DDX55Q8NHQ9 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.764e-14■□□□□ 11.1
DDX55Q8NHQ9 PRPF8-203ENST00000571958 380 ntTSL 312.67□□□□□ -0.383e-10■□□□□ 11.1
DDX55Q8NHQ9 MLST8-208ENST00000562392 1662 ntTSL 225.6■■□□□ 1.697e-7■□□□□ 11.1
DDX55Q8NHQ9 RPS17-204ENST00000559776 760 ntTSL 217.45■□□□□ 0.382e-40■□□□□ 11.1
DDX55Q8NHQ9 PTPRS-206ENST00000588552 5443 ntTSL 1 (best)16.43■□□□□ 0.221e-10■□□□□ 11.1
DDX55Q8NHQ9 STRN4-222ENST00000601869 2240 nt20.63■□□□□ 0.892e-6■□□□□ 11.1
DDX55Q8NHQ9 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.557e-11■□□□□ 11.1
DDX55Q8NHQ9 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC15.39■□□□□ 0.057e-11■□□□□ 11.1
DDX55Q8NHQ9 PLCB3-201ENST00000279230 4197 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.177e-11■□□□□ 11.1
DDX55Q8NHQ9 APLP2-207ENST00000525604 1590 ntTSL 218.23■□□□□ 0.516e-9■□□□□ 11.1
DDX55Q8NHQ9 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.036e-9■□□□□ 11.1
DDX55Q8NHQ9 ASAH1-219ENST00000636033 1940 ntTSL 524.05■■□□□ 1.445e-11■□□□□ 11.1
DDX55Q8NHQ9 METTL26-209ENST00000565163 485 ntTSL 323.49■■□□□ 1.355e-11■□□□□ 11.1
DDX55Q8NHQ9 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC22.02■■□□□ 1.125e-11■□□□□ 11.1
DDX55Q8NHQ9 METTL26-212ENST00000568773 499 ntTSL 221.75■■□□□ 1.075e-11■□□□□ 11.1
DDX55Q8NHQ9 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC21.31■■□□□ 15e-11■□□□□ 11.1
DDX55Q8NHQ9 ASAH1-252ENST00000637603 579 ntTSL 420.49■□□□□ 0.875e-11■□□□□ 11.1
Retrieved 100 of 15,504 protein–RNA pairs in 137.2 ms