Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 RCC2P3-201ENST00000418112 1537 ntBASIC18.59■□□□□ 0.57
ZNF549Q6P9A3 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
ZNF549Q6P9A3 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
ZNF549Q6P9A3 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
ZNF549Q6P9A3 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
ZNF549Q6P9A3 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
ZNF549Q6P9A3 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC18.59■□□□□ 0.57
ZNF549Q6P9A3 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
ZNF549Q6P9A3 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
ZNF549Q6P9A3 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC18.59■□□□□ 0.57
ZNF549Q6P9A3 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC18.59■□□□□ 0.57
ZNF549Q6P9A3 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC18.59■□□□□ 0.57
ZNF549Q6P9A3 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
ZNF549Q6P9A3 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
ZNF549Q6P9A3 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC18.59■□□□□ 0.57
ZNF549Q6P9A3 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC18.59■□□□□ 0.57
ZNF549Q6P9A3 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC18.59■□□□□ 0.57
ZNF549Q6P9A3 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC18.59■□□□□ 0.57
ZNF549Q6P9A3 AC097488.1-201ENST00000507834 756 ntBASIC18.59■□□□□ 0.57
ZNF549Q6P9A3 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC18.59■□□□□ 0.57
ZNF549Q6P9A3 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC18.59■□□□□ 0.57
ZNF549Q6P9A3 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC18.59■□□□□ 0.57
ZNF549Q6P9A3 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC18.59■□□□□ 0.57
ZNF549Q6P9A3 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
ZNF549Q6P9A3 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18.59■□□□□ 0.57
ZNF549Q6P9A3 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
ZNF549Q6P9A3 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC18.59■□□□□ 0.57
ZNF549Q6P9A3 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
ZNF549Q6P9A3 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC18.59■□□□□ 0.57
ZNF549Q6P9A3 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
ZNF549Q6P9A3 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
ZNF549Q6P9A3 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
ZNF549Q6P9A3 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
ZNF549Q6P9A3 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
ZNF549Q6P9A3 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
ZNF549Q6P9A3 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
ZNF549Q6P9A3 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC18.58■□□□□ 0.57
ZNF549Q6P9A3 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
ZNF549Q6P9A3 BAALC-201ENST00000297574 801 ntTSL 3 BASIC18.58■□□□□ 0.56
ZNF549Q6P9A3 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC18.58■□□□□ 0.56
ZNF549Q6P9A3 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC18.58■□□□□ 0.56
ZNF549Q6P9A3 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC18.58■□□□□ 0.56
ZNF549Q6P9A3 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC18.58■□□□□ 0.56
ZNF549Q6P9A3 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
ZNF549Q6P9A3 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
ZNF549Q6P9A3 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
ZNF549Q6P9A3 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
ZNF549Q6P9A3 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC18.58■□□□□ 0.56
ZNF549Q6P9A3 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC18.58■□□□□ 0.56
ZNF549Q6P9A3 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
ZNF549Q6P9A3 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
ZNF549Q6P9A3 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
ZNF549Q6P9A3 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
ZNF549Q6P9A3 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
ZNF549Q6P9A3 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
ZNF549Q6P9A3 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
ZNF549Q6P9A3 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
ZNF549Q6P9A3 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
ZNF549Q6P9A3 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
ZNF549Q6P9A3 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
ZNF549Q6P9A3 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
ZNF549Q6P9A3 AL355355.2-201ENST00000442321 338 ntBASIC18.57■□□□□ 0.56
ZNF549Q6P9A3 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
ZNF549Q6P9A3 AP003071.4-201ENST00000562276 1284 ntBASIC18.57■□□□□ 0.56
ZNF549Q6P9A3 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC18.57■□□□□ 0.56
ZNF549Q6P9A3 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC18.57■□□□□ 0.56
ZNF549Q6P9A3 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC18.57■□□□□ 0.56
ZNF549Q6P9A3 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC18.57■□□□□ 0.56
ZNF549Q6P9A3 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC18.57■□□□□ 0.56
ZNF549Q6P9A3 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
ZNF549Q6P9A3 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC18.57■□□□□ 0.56
ZNF549Q6P9A3 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
ZNF549Q6P9A3 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC18.57■□□□□ 0.56
ZNF549Q6P9A3 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
ZNF549Q6P9A3 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
ZNF549Q6P9A3 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
ZNF549Q6P9A3 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC18.57■□□□□ 0.56
ZNF549Q6P9A3 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
ZNF549Q6P9A3 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
ZNF549Q6P9A3 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC18.57■□□□□ 0.56
ZNF549Q6P9A3 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
ZNF549Q6P9A3 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
ZNF549Q6P9A3 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC18.56■□□□□ 0.56
ZNF549Q6P9A3 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
ZNF549Q6P9A3 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
ZNF549Q6P9A3 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
ZNF549Q6P9A3 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
ZNF549Q6P9A3 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC18.56■□□□□ 0.56
ZNF549Q6P9A3 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
ZNF549Q6P9A3 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
ZNF549Q6P9A3 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
ZNF549Q6P9A3 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
ZNF549Q6P9A3 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
ZNF549Q6P9A3 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
ZNF549Q6P9A3 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC18.56■□□□□ 0.56
ZNF549Q6P9A3 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
ZNF549Q6P9A3 TSPY7P-201ENST00000431358 1114 ntBASIC18.56■□□□□ 0.56
ZNF549Q6P9A3 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC18.56■□□□□ 0.56
ZNF549Q6P9A3 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC18.56■□□□□ 0.56
ZNF549Q6P9A3 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms