Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
CCDC144BQ3MJ40 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC144BQ3MJ40 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC21.71■■□□□ 1.07
CCDC144BQ3MJ40 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC144BQ3MJ40 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
CCDC144BQ3MJ40 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC21.71■■□□□ 1.07
CCDC144BQ3MJ40 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC144BQ3MJ40 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC144BQ3MJ40 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC144BQ3MJ40 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC21.71■■□□□ 1.07
CCDC144BQ3MJ40 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
CCDC144BQ3MJ40 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC21.71■■□□□ 1.07
CCDC144BQ3MJ40 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC144BQ3MJ40 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC144BQ3MJ40 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC144BQ3MJ40 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC144BQ3MJ40 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC144BQ3MJ40 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC144BQ3MJ40 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC144BQ3MJ40 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC144BQ3MJ40 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC21.7■■□□□ 1.06
CCDC144BQ3MJ40 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC144BQ3MJ40 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC144BQ3MJ40 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC144BQ3MJ40 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC21.7■■□□□ 1.06
CCDC144BQ3MJ40 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC21.7■■□□□ 1.06
CCDC144BQ3MJ40 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC21.7■■□□□ 1.06
CCDC144BQ3MJ40 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC21.7■■□□□ 1.06
CCDC144BQ3MJ40 KRT18P56-201ENST00000507275 550 ntBASIC21.7■■□□□ 1.06
CCDC144BQ3MJ40 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC21.7■■□□□ 1.06
CCDC144BQ3MJ40 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC21.7■■□□□ 1.06
CCDC144BQ3MJ40 ETFA-216ENST00000560726 942 ntTSL 3 BASIC21.7■■□□□ 1.06
CCDC144BQ3MJ40 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC144BQ3MJ40 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC21.7■■□□□ 1.06
CCDC144BQ3MJ40 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC144BQ3MJ40 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC144BQ3MJ40 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC21.7■■□□□ 1.06
CCDC144BQ3MJ40 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC144BQ3MJ40 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC144BQ3MJ40 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC144BQ3MJ40 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
CCDC144BQ3MJ40 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC21.7■■□□□ 1.06
CCDC144BQ3MJ40 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC21.7■■□□□ 1.06
CCDC144BQ3MJ40 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC21.7■■□□□ 1.06
CCDC144BQ3MJ40 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC144BQ3MJ40 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC144BQ3MJ40 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC144BQ3MJ40 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC144BQ3MJ40 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC144BQ3MJ40 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
CCDC144BQ3MJ40 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC144BQ3MJ40 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC144BQ3MJ40 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC144BQ3MJ40 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC21.69■■□□□ 1.06
CCDC144BQ3MJ40 AL671277.2-201ENST00000458060 996 ntBASIC21.69■■□□□ 1.06
CCDC144BQ3MJ40 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC21.69■■□□□ 1.06
CCDC144BQ3MJ40 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC144BQ3MJ40 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC21.69■■□□□ 1.06
CCDC144BQ3MJ40 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC21.69■■□□□ 1.06
CCDC144BQ3MJ40 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC21.69■■□□□ 1.06
CCDC144BQ3MJ40 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC21.69■■□□□ 1.06
CCDC144BQ3MJ40 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC144BQ3MJ40 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC21.69■■□□□ 1.06
CCDC144BQ3MJ40 IER3-202ENST00000376377 1350 ntBASIC21.69■■□□□ 1.06
CCDC144BQ3MJ40 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC144BQ3MJ40 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC144BQ3MJ40 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC144BQ3MJ40 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CCDC144BQ3MJ40 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC21.68■■□□□ 1.06
CCDC144BQ3MJ40 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC21.68■■□□□ 1.06
CCDC144BQ3MJ40 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC21.68■■□□□ 1.06
CCDC144BQ3MJ40 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC144BQ3MJ40 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC21.68■■□□□ 1.06
CCDC144BQ3MJ40 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC144BQ3MJ40 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC21.68■■□□□ 1.06
CCDC144BQ3MJ40 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC21.68■■□□□ 1.06
CCDC144BQ3MJ40 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC144BQ3MJ40 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC144BQ3MJ40 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC144BQ3MJ40 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
CCDC144BQ3MJ40 PRSS44-201ENST00000515154 1146 ntBASIC21.68■■□□□ 1.06
CCDC144BQ3MJ40 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC21.68■■□□□ 1.06
CCDC144BQ3MJ40 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC144BQ3MJ40 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC21.68■■□□□ 1.06
CCDC144BQ3MJ40 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC144BQ3MJ40 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC21.68■■□□□ 1.06
CCDC144BQ3MJ40 AC008622.2-201ENST00000617006 1229 ntBASIC21.68■■□□□ 1.06
CCDC144BQ3MJ40 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC144BQ3MJ40 KRT8P11-201ENST00000409686 1436 ntBASIC21.68■■□□□ 1.06
CCDC144BQ3MJ40 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC144BQ3MJ40 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC144BQ3MJ40 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
CCDC144BQ3MJ40 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC21.68■■□□□ 1.06
CCDC144BQ3MJ40 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC144BQ3MJ40 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC144BQ3MJ40 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC144BQ3MJ40 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CCDC144BQ3MJ40 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC21.68■■□□□ 1.06
CCDC144BQ3MJ40 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC144BQ3MJ40 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC21.67■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms