Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PKNOX1P55347 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
PKNOX1P55347 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
PKNOX1P55347 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
PKNOX1P55347 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
PKNOX1P55347 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
PKNOX1P55347 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
PKNOX1P55347 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
PKNOX1P55347 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC18.37■□□□□ 0.53
PKNOX1P55347 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC18.37■□□□□ 0.53
PKNOX1P55347 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PKNOX1P55347 PXK-206ENST00000463280 2825 ntTSL 2 BASIC18.37■□□□□ 0.53
PKNOX1P55347 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PKNOX1P55347 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PKNOX1P55347 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PKNOX1P55347 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PKNOX1P55347 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC18.37■□□□□ 0.53
PKNOX1P55347 ID1-201ENST00000376105 1233 ntBASIC18.37■□□□□ 0.53
PKNOX1P55347 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
PKNOX1P55347 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC18.37■□□□□ 0.53
PKNOX1P55347 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PKNOX1P55347 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC18.37■□□□□ 0.53
PKNOX1P55347 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PKNOX1P55347 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC18.37■□□□□ 0.53
PKNOX1P55347 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
PKNOX1P55347 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
PKNOX1P55347 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC18.37■□□□□ 0.53
PKNOX1P55347 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
PKNOX1P55347 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC18.37■□□□□ 0.53
PKNOX1P55347 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PKNOX1P55347 CD276-203ENST00000537340 2439 ntTSL 2 BASIC18.37■□□□□ 0.53
PKNOX1P55347 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
PKNOX1P55347 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PKNOX1P55347 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
PKNOX1P55347 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
PKNOX1P55347 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PKNOX1P55347 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
PKNOX1P55347 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
PKNOX1P55347 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PKNOX1P55347 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
PKNOX1P55347 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PKNOX1P55347 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PKNOX1P55347 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PKNOX1P55347 POU5F1P3-201ENST00000428824 1078 ntBASIC18.36■□□□□ 0.53
PKNOX1P55347 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
PKNOX1P55347 AC133681.1-201ENST00000465482 601 ntBASIC18.36■□□□□ 0.53
PKNOX1P55347 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC18.36■□□□□ 0.53
PKNOX1P55347 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
PKNOX1P55347 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
PKNOX1P55347 LY6E-205ENST00000519611 635 ntTSL 3 BASIC18.36■□□□□ 0.53
PKNOX1P55347 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC18.36■□□□□ 0.53
PKNOX1P55347 AL445675.2-201ENST00000620291 557 ntBASIC18.36■□□□□ 0.53
PKNOX1P55347 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
PKNOX1P55347 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
PKNOX1P55347 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PKNOX1P55347 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC18.36■□□□□ 0.53
PKNOX1P55347 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
PKNOX1P55347 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC18.35■□□□□ 0.53
PKNOX1P55347 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PKNOX1P55347 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
PKNOX1P55347 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
PKNOX1P55347 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC18.35■□□□□ 0.53
PKNOX1P55347 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC18.35■□□□□ 0.53
PKNOX1P55347 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
PKNOX1P55347 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
PKNOX1P55347 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PKNOX1P55347 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PKNOX1P55347 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PKNOX1P55347 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC18.35■□□□□ 0.53
PKNOX1P55347 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PKNOX1P55347 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
PKNOX1P55347 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
PKNOX1P55347 SERF2-207ENST00000409614 582 ntTSL 2 BASIC18.35■□□□□ 0.53
PKNOX1P55347 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
PKNOX1P55347 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PKNOX1P55347 PTPA-216ENST00000432651 857 ntTSL 2 BASIC18.35■□□□□ 0.53
PKNOX1P55347 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PKNOX1P55347 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC18.35■□□□□ 0.53
PKNOX1P55347 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC18.35■□□□□ 0.53
PKNOX1P55347 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC18.35■□□□□ 0.53
PKNOX1P55347 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC18.35■□□□□ 0.53
PKNOX1P55347 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
PKNOX1P55347 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC18.35■□□□□ 0.53
PKNOX1P55347 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PKNOX1P55347 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PKNOX1P55347 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PKNOX1P55347 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC18.35■□□□□ 0.53
PKNOX1P55347 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PKNOX1P55347 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
PKNOX1P55347 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PKNOX1P55347 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
PKNOX1P55347 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PKNOX1P55347 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
PKNOX1P55347 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC18.34■□□□□ 0.53
PKNOX1P55347 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PKNOX1P55347 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
PKNOX1P55347 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC18.34■□□□□ 0.53
PKNOX1P55347 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
PKNOX1P55347 KATNBL1P6-202ENST00000562413 1466 ntBASIC18.34■□□□□ 0.53
PKNOX1P55347 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms