Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
MSX2P35548 GUK1-205ENST00000366722 850 ntTSL 3 BASIC17.87■□□□□ 0.45
MSX2P35548 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
MSX2P35548 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC17.87■□□□□ 0.45
MSX2P35548 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC17.87■□□□□ 0.45
MSX2P35548 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
MSX2P35548 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
MSX2P35548 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
MSX2P35548 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
MSX2P35548 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
MSX2P35548 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
MSX2P35548 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
MSX2P35548 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC17.87■□□□□ 0.45
MSX2P35548 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
MSX2P35548 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
MSX2P35548 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
MSX2P35548 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC17.87■□□□□ 0.45
MSX2P35548 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
MSX2P35548 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC17.87■□□□□ 0.45
MSX2P35548 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC17.87■□□□□ 0.45
MSX2P35548 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
MSX2P35548 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
MSX2P35548 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
MSX2P35548 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
MSX2P35548 CEP83-AS1-201ENST00000623122 2482 ntBASIC17.87■□□□□ 0.45
MSX2P35548 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
MSX2P35548 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC17.86■□□□□ 0.45
MSX2P35548 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
MSX2P35548 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
MSX2P35548 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC17.86■□□□□ 0.45
MSX2P35548 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
MSX2P35548 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
MSX2P35548 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
MSX2P35548 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC17.86■□□□□ 0.45
MSX2P35548 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC17.86■□□□□ 0.45
MSX2P35548 AC006015.1-201ENST00000429970 570 ntBASIC17.86■□□□□ 0.45
MSX2P35548 AC073210.2-201ENST00000430369 194 ntBASIC17.86■□□□□ 0.45
MSX2P35548 KRT18P5-201ENST00000436075 1291 ntBASIC17.86■□□□□ 0.45
MSX2P35548 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC17.86■□□□□ 0.45
MSX2P35548 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC17.86■□□□□ 0.45
MSX2P35548 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
MSX2P35548 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
MSX2P35548 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
MSX2P35548 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC17.86■□□□□ 0.45
MSX2P35548 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
MSX2P35548 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
MSX2P35548 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
MSX2P35548 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
MSX2P35548 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
MSX2P35548 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
MSX2P35548 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
MSX2P35548 PRORSD1P-202ENST00000563365 2154 ntBASIC17.86■□□□□ 0.45
MSX2P35548 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
MSX2P35548 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
MSX2P35548 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC17.85■□□□□ 0.45
MSX2P35548 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
MSX2P35548 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
MSX2P35548 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
MSX2P35548 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC17.85■□□□□ 0.45
MSX2P35548 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
MSX2P35548 GNAS-203ENST00000306120 1878 ntBASIC17.85■□□□□ 0.45
MSX2P35548 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
MSX2P35548 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
MSX2P35548 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
MSX2P35548 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
MSX2P35548 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC17.85■□□□□ 0.45
MSX2P35548 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC17.85■□□□□ 0.45
MSX2P35548 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
MSX2P35548 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
MSX2P35548 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
MSX2P35548 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC17.85■□□□□ 0.45
MSX2P35548 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
MSX2P35548 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC17.85■□□□□ 0.45
MSX2P35548 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
MSX2P35548 GGT1-206ENST00000404223 952 ntTSL 2 BASIC17.85■□□□□ 0.45
MSX2P35548 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
MSX2P35548 GAS2L1P1-201ENST00000420145 1480 ntBASIC17.85■□□□□ 0.45
MSX2P35548 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
MSX2P35548 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC17.85■□□□□ 0.45
MSX2P35548 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
MSX2P35548 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
MSX2P35548 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC17.85■□□□□ 0.45
MSX2P35548 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC17.85■□□□□ 0.45
MSX2P35548 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC17.85■□□□□ 0.45
MSX2P35548 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
MSX2P35548 CRK-204ENST00000574295 1391 ntTSL 5 BASIC17.85■□□□□ 0.45
MSX2P35548 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC17.85■□□□□ 0.45
MSX2P35548 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
MSX2P35548 AC087623.3-201ENST00000607047 1098 ntBASIC17.85■□□□□ 0.45
MSX2P35548 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
MSX2P35548 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC17.85■□□□□ 0.45
MSX2P35548 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
MSX2P35548 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC17.85■□□□□ 0.45
MSX2P35548 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
MSX2P35548 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC17.84■□□□□ 0.45
MSX2P35548 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
MSX2P35548 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
MSX2P35548 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
MSX2P35548 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
MSX2P35548 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms