Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC19.46■□□□□ 0.71
HOXA9P31269 AC141586.3-201ENST00000562166 1838 ntBASIC19.46■□□□□ 0.71
HOXA9P31269 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HOXA9P31269 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HOXA9P31269 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HOXA9P31269 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC19.46■□□□□ 0.71
HOXA9P31269 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
HOXA9P31269 IGHGP-201ENST00000390555 1178 ntBASIC19.46■□□□□ 0.71
HOXA9P31269 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
HOXA9P31269 AC104819.1-201ENST00000504587 486 ntBASIC19.46■□□□□ 0.71
HOXA9P31269 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
HOXA9P31269 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC19.46■□□□□ 0.71
HOXA9P31269 NAT14-202ENST00000587400 416 ntTSL 5 BASIC19.46■□□□□ 0.71
HOXA9P31269 TEN1-204ENST00000588202 862 ntTSL 3 BASIC19.46■□□□□ 0.71
HOXA9P31269 TK1-205ENST00000590862 642 ntTSL 3 BASIC19.46■□□□□ 0.71
HOXA9P31269 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC19.46■□□□□ 0.71
HOXA9P31269 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
HOXA9P31269 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
HOXA9P31269 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HOXA9P31269 KRT89P-201ENST00000620027 1478 ntBASIC19.46■□□□□ 0.71
HOXA9P31269 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC19.46■□□□□ 0.71
HOXA9P31269 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HOXA9P31269 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC19.46■□□□□ 0.71
HOXA9P31269 AC125437.2-201ENST00000625180 2167 ntBASIC19.46■□□□□ 0.71
HOXA9P31269 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
HOXA9P31269 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC19.45■□□□□ 0.7
HOXA9P31269 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
HOXA9P31269 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC19.45■□□□□ 0.7
HOXA9P31269 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
HOXA9P31269 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
HOXA9P31269 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC19.45■□□□□ 0.7
HOXA9P31269 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
HOXA9P31269 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HOXA9P31269 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC19.45■□□□□ 0.7
HOXA9P31269 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
HOXA9P31269 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
HOXA9P31269 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC19.45■□□□□ 0.7
HOXA9P31269 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC19.45■□□□□ 0.7
HOXA9P31269 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HOXA9P31269 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
HOXA9P31269 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HOXA9P31269 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
HOXA9P31269 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC19.45■□□□□ 0.7
HOXA9P31269 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC19.45■□□□□ 0.7
HOXA9P31269 KRT18P31-201ENST00000506277 1292 ntBASIC19.45■□□□□ 0.7
HOXA9P31269 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC19.45■□□□□ 0.7
HOXA9P31269 AL732292.2-201ENST00000609649 430 ntBASIC19.45■□□□□ 0.7
HOXA9P31269 IGHV3-41-201ENST00000613121 348 ntBASIC19.45■□□□□ 0.7
HOXA9P31269 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HOXA9P31269 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
HOXA9P31269 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HOXA9P31269 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HOXA9P31269 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HOXA9P31269 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HOXA9P31269 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
HOXA9P31269 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC19.44■□□□□ 0.7
HOXA9P31269 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC19.44■□□□□ 0.7
HOXA9P31269 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
HOXA9P31269 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HOXA9P31269 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC19.44■□□□□ 0.7
HOXA9P31269 AC024563.2-201ENST00000603282 481 ntBASIC19.44■□□□□ 0.7
HOXA9P31269 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC19.44■□□□□ 0.7
HOXA9P31269 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HOXA9P31269 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HOXA9P31269 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC19.44■□□□□ 0.7
HOXA9P31269 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC19.44■□□□□ 0.7
HOXA9P31269 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HOXA9P31269 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC19.44■□□□□ 0.7
HOXA9P31269 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC19.44■□□□□ 0.7
HOXA9P31269 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
HOXA9P31269 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HOXA9P31269 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
HOXA9P31269 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC19.44■□□□□ 0.7
HOXA9P31269 AC233702.3-201ENST00000578656 1387 ntBASIC19.44■□□□□ 0.7
HOXA9P31269 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
HOXA9P31269 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HOXA9P31269 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
HOXA9P31269 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
HOXA9P31269 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
HOXA9P31269 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC19.43■□□□□ 0.7
HOXA9P31269 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
HOXA9P31269 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
HOXA9P31269 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HOXA9P31269 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
HOXA9P31269 FOSL1P1-201ENST00000511041 816 ntBASIC19.43■□□□□ 0.7
HOXA9P31269 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC19.43■□□□□ 0.7
HOXA9P31269 REEP1-209ENST00000541910 969 ntTSL 2 BASIC19.43■□□□□ 0.7
HOXA9P31269 Z69720.1-201ENST00000601483 472 ntBASIC19.43■□□□□ 0.7
HOXA9P31269 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC19.43■□□□□ 0.7
HOXA9P31269 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HOXA9P31269 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
HOXA9P31269 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
HOXA9P31269 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC19.43■□□□□ 0.7
HOXA9P31269 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HOXA9P31269 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC19.43■□□□□ 0.7
HOXA9P31269 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
HOXA9P31269 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
HOXA9P31269 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
HOXA9P31269 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HOXA9P31269 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms