Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
COL6A3P12111 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
COL6A3P12111 MIR661-201ENST00000384842 89 ntBASIC19.5■□□□□ 0.71
COL6A3P12111 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL6A3P12111 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
COL6A3P12111 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
COL6A3P12111 GOLGA6L17P-202ENST00000614358 1398 ntBASIC19.49■□□□□ 0.71
COL6A3P12111 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL6A3P12111 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
COL6A3P12111 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC19.49■□□□□ 0.71
COL6A3P12111 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC19.49■□□□□ 0.71
COL6A3P12111 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
COL6A3P12111 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL6A3P12111 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL6A3P12111 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL6A3P12111 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
COL6A3P12111 MRPL20P1-201ENST00000400819 433 ntBASIC19.49■□□□□ 0.71
COL6A3P12111 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
COL6A3P12111 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL6A3P12111 AP002414.1-201ENST00000391405 1147 ntBASIC19.48■□□□□ 0.71
COL6A3P12111 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
COL6A3P12111 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC19.48■□□□□ 0.71
COL6A3P12111 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC19.48■□□□□ 0.71
COL6A3P12111 AQP6-203ENST00000551733 849 ntTSL 3 BASIC19.48■□□□□ 0.71
COL6A3P12111 AC010240.3-201ENST00000607688 395 ntBASIC19.48■□□□□ 0.71
COL6A3P12111 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL6A3P12111 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
COL6A3P12111 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC19.48■□□□□ 0.71
COL6A3P12111 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL6A3P12111 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL6A3P12111 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL6A3P12111 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
COL6A3P12111 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL6A3P12111 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL6A3P12111 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
COL6A3P12111 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC19.48■□□□□ 0.71
COL6A3P12111 MKNK2P1-201ENST00000437526 628 ntBASIC19.48■□□□□ 0.71
COL6A3P12111 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC19.48■□□□□ 0.71
COL6A3P12111 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL6A3P12111 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
COL6A3P12111 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL6A3P12111 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC19.48■□□□□ 0.71
COL6A3P12111 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
COL6A3P12111 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
COL6A3P12111 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC19.48■□□□□ 0.71
COL6A3P12111 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL6A3P12111 ELK2BP-201ENST00000415014 1224 ntBASIC19.48■□□□□ 0.71
COL6A3P12111 DDT-206ENST00000430101 573 ntTSL 2 BASIC19.48■□□□□ 0.71
COL6A3P12111 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC19.48■□□□□ 0.71
COL6A3P12111 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC19.48■□□□□ 0.71
COL6A3P12111 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC19.48■□□□□ 0.71
COL6A3P12111 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC19.48■□□□□ 0.71
COL6A3P12111 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC19.48■□□□□ 0.71
COL6A3P12111 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
COL6A3P12111 MYB-221ENST00000527615 2381 ntTSL 5 BASIC19.47■□□□□ 0.71
COL6A3P12111 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL6A3P12111 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
COL6A3P12111 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC19.47■□□□□ 0.71
COL6A3P12111 LSM12-202ENST00000585388 942 ntTSL 3 BASIC19.47■□□□□ 0.71
COL6A3P12111 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
COL6A3P12111 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL6A3P12111 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC19.47■□□□□ 0.71
COL6A3P12111 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
COL6A3P12111 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
COL6A3P12111 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
COL6A3P12111 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC19.47■□□□□ 0.71
COL6A3P12111 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC19.47■□□□□ 0.71
COL6A3P12111 STOM-202ENST00000347359 870 ntTSL 2 BASIC19.47■□□□□ 0.71
COL6A3P12111 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC19.47■□□□□ 0.71
COL6A3P12111 PDPK2P-202ENST00000562415 1191 ntBASIC19.47■□□□□ 0.71
COL6A3P12111 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
COL6A3P12111 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC19.47■□□□□ 0.71
COL6A3P12111 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
COL6A3P12111 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
COL6A3P12111 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC19.47■□□□□ 0.71
COL6A3P12111 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC19.47■□□□□ 0.71
COL6A3P12111 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
COL6A3P12111 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL6A3P12111 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
COL6A3P12111 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC19.46■□□□□ 0.71
COL6A3P12111 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL6A3P12111 GOLGA6L5P-202ENST00000515341 1828 ntBASIC19.46■□□□□ 0.71
COL6A3P12111 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL6A3P12111 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
COL6A3P12111 RCN1P2-201ENST00000398357 915 ntBASIC19.46■□□□□ 0.71
COL6A3P12111 RBSN-204ENST00000449050 903 ntTSL 2 BASIC19.46■□□□□ 0.71
COL6A3P12111 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL6A3P12111 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC19.46■□□□□ 0.71
COL6A3P12111 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC19.46■□□□□ 0.71
COL6A3P12111 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC19.46■□□□□ 0.71
COL6A3P12111 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
COL6A3P12111 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
COL6A3P12111 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC19.46■□□□□ 0.71
COL6A3P12111 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC19.46■□□□□ 0.71
COL6A3P12111 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC19.46■□□□□ 0.71
COL6A3P12111 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL6A3P12111 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
COL6A3P12111 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC19.46■□□□□ 0.71
COL6A3P12111 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
COL6A3P12111 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC19.46■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms