Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC14.09□□□□□ -0.15
HLA-DQA1P01909 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC14.09□□□□□ -0.15
HLA-DQA1P01909 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
HLA-DQA1P01909 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
HLA-DQA1P01909 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
HLA-DQA1P01909 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
HLA-DQA1P01909 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HLA-DQA1P01909 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
HLA-DQA1P01909 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HLA-DQA1P01909 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HLA-DQA1P01909 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC14.09□□□□□ -0.15
HLA-DQA1P01909 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC14.09□□□□□ -0.15
HLA-DQA1P01909 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
HLA-DQA1P01909 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC14.09□□□□□ -0.15
HLA-DQA1P01909 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC14.09□□□□□ -0.15
HLA-DQA1P01909 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
HLA-DQA1P01909 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
HLA-DQA1P01909 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
HLA-DQA1P01909 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
HLA-DQA1P01909 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.15
HLA-DQA1P01909 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
HLA-DQA1P01909 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.15
HLA-DQA1P01909 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC14.08□□□□□ -0.15
HLA-DQA1P01909 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC14.08□□□□□ -0.15
HLA-DQA1P01909 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC14.08□□□□□ -0.15
HLA-DQA1P01909 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
HLA-DQA1P01909 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.15
HLA-DQA1P01909 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC14.08□□□□□ -0.16
HLA-DQA1P01909 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
HLA-DQA1P01909 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
HLA-DQA1P01909 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC14.08□□□□□ -0.16
HLA-DQA1P01909 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
HLA-DQA1P01909 FEM1AP3-201ENST00000403722 1741 ntBASIC14.08□□□□□ -0.16
HLA-DQA1P01909 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HLA-DQA1P01909 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
HLA-DQA1P01909 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC14.08□□□□□ -0.16
HLA-DQA1P01909 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC14.08□□□□□ -0.16
HLA-DQA1P01909 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HLA-DQA1P01909 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC14.08□□□□□ -0.16
HLA-DQA1P01909 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC14.08□□□□□ -0.16
HLA-DQA1P01909 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HLA-DQA1P01909 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC14.08□□□□□ -0.16
HLA-DQA1P01909 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC14.08□□□□□ -0.16
HLA-DQA1P01909 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC14.08□□□□□ -0.16
HLA-DQA1P01909 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC14.08□□□□□ -0.16
HLA-DQA1P01909 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
HLA-DQA1P01909 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
HLA-DQA1P01909 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HLA-DQA1P01909 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC14.08□□□□□ -0.16
HLA-DQA1P01909 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
HLA-DQA1P01909 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC14.08□□□□□ -0.16
HLA-DQA1P01909 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HLA-DQA1P01909 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
HLA-DQA1P01909 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HLA-DQA1P01909 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC14.08□□□□□ -0.16
HLA-DQA1P01909 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC14.08□□□□□ -0.16
HLA-DQA1P01909 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
HLA-DQA1P01909 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HLA-DQA1P01909 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC14.07□□□□□ -0.16
HLA-DQA1P01909 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
HLA-DQA1P01909 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC14.07□□□□□ -0.16
HLA-DQA1P01909 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
HLA-DQA1P01909 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC14.07□□□□□ -0.16
HLA-DQA1P01909 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
HLA-DQA1P01909 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HLA-DQA1P01909 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HLA-DQA1P01909 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
HLA-DQA1P01909 NARF-204ENST00000390006 1766 ntTSL 2 BASIC14.07□□□□□ -0.16
HLA-DQA1P01909 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HLA-DQA1P01909 AC138028.4-201ENST00000564984 1845 ntBASIC14.07□□□□□ -0.16
HLA-DQA1P01909 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
HLA-DQA1P01909 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HLA-DQA1P01909 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC14.07□□□□□ -0.16
HLA-DQA1P01909 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC14.07□□□□□ -0.16
HLA-DQA1P01909 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
HLA-DQA1P01909 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC14.07□□□□□ -0.16
HLA-DQA1P01909 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HLA-DQA1P01909 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC14.07□□□□□ -0.16
HLA-DQA1P01909 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
HLA-DQA1P01909 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC14.07□□□□□ -0.16
HLA-DQA1P01909 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
HLA-DQA1P01909 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
HLA-DQA1P01909 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC14.07□□□□□ -0.16
HLA-DQA1P01909 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
HLA-DQA1P01909 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
HLA-DQA1P01909 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HLA-DQA1P01909 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
HLA-DQA1P01909 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
HLA-DQA1P01909 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
HLA-DQA1P01909 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
HLA-DQA1P01909 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HLA-DQA1P01909 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC14.06□□□□□ -0.16
HLA-DQA1P01909 AC135776.1-201ENST00000319817 2481 ntBASIC14.06□□□□□ -0.16
HLA-DQA1P01909 LTF-203ENST00000426532 2494 ntTSL 2 BASIC14.06□□□□□ -0.16
HLA-DQA1P01909 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
HLA-DQA1P01909 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
HLA-DQA1P01909 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC14.06□□□□□ -0.16
HLA-DQA1P01909 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
HLA-DQA1P01909 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
HLA-DQA1P01909 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms